Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq17 123 2e-23 seq15 107 2e-18 seq3 102 7e-17 seq10 98.7 9e-16 seq18 91.5 1e-13 seq14 89.7 5e-13 seq12 82.4 7e-11 >seq17 Length=136257712 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | ||||| |||||||| | ||| || || || ||| | Sbjct 39746525 TCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 39746466 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || |||||||| |||||||| ||||| || Sbjct 39746465 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 39746406 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 39746405 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGAT 39746346 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || |||||| |||||||||| Sbjct 39746345 GGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq15 Length=152823684 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| || || || || || | ||| ||||| | Sbjct 125084945 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAC 125085004 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 125085005 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 125085064 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || ||||||||||| | | |||||| | | ||||| Sbjct 125085065 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 125085124 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | |||||||||||||||||||| Sbjct 125085125 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq3 Length=125065471 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| ||||| || |||| | | Sbjct 98064604 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCA 98064663 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||| ||| | || || | || ||||| || || || | || || ||| Sbjct 98064664 TCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTG 98064723 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| |||||| | | || || |||| |||||| Sbjct 98064724 TCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATG 98064783 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || | || || ||||| |||||||||||| Sbjct 98064784 GTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 62144901 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 62144842 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| || ||||| || ||| ||||||| | || ||||| || || || Sbjct 62144841 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 62144782 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | || || ||||| || ||| |||||| | | || || Sbjct 62144781 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 62144722 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || || ||||| ||||||||||||| Sbjct 62144721 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 62144673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 62144673 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 62144614 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || ||||| || || ||||||| | || ||||| || || || Sbjct 62144613 AGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 62144554 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || ||||| || | || || ||||| ||| ||| |||||| | | || || Sbjct 62144553 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 62144494 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 62144493 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62144447 >seq10 Length=90668104 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||||| || || || || || | ||| || ||| || ||| | | Sbjct 33660462 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 33660521 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| || || || | || ||||| || ||||| || ||||| ||| Sbjct 33660522 TCCTCCAGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 33660581 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | ||||| |||| |||||| Sbjct 33660582 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 33660641 Query 94973 GTTTTTCCAGTAAGAGTTTTCA 94994 || || || || || || |||| Sbjct 33660642 GTCTTGCCCGTCAGGGTCTTCA 33660663 >seq18 Length=130317789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/229 (68%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || ||||||||| || | || || |||||||| | ||| || || || ||| | Sbjct 111279670 TCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 111279729 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || |||||| | || |||||||| |||||||| ||||| || Sbjct 111279730 ATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 111279789 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || |||| |||||| Sbjct 111279790 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGAT 111279849 Query 94972 GGTTTTTCCAG-------------TAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||| || ||||||||||||||||| Sbjct 111279850 GGTTTCCCCCGCCCCCTACCCCCCCAAGGGTCTTCACAAAGATCTGCAT 111279898 >seq14 Length=152946536 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAA---GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT 94848 || |||||| | ||| | | || || ||| |||| | ||| || || || ||| Sbjct 128583620 TCTCAACACAAGGTGAAGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTCCG 128583679 Query 94849 GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTC 94908 | ||| |||||||| || || ||||| | || || |||||||| ||||||| |||| Sbjct 128583680 GCCATCTTCCAGCTGCTTACCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAGTTCTTC 128583739 Query 94909 TTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGT 94968 || || | | || ||||| || | | |||||| | | | || || || | ||| Sbjct 128583740 CTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 128583799 Query 94969 GATGGTTTT-TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || |||| || ||||||||||||||||| Sbjct 128583800 GATGGTTTTCCCCCATAAGGGTCTTCACAAAGATCTGCAT 128583839 >seq12 Length=182815943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||||| | ||| || || | ||| | Sbjct 146741568 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTC----AAAGTCCGGCC 146741623 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| | | | | || || ||||||| | || |||||||| |||||||| ||||| || Sbjct 146741624 ATCTTTCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 146741683 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | | || |||| || | | |||||| | | || || || | |||||| Sbjct 146741684 ATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCCAGCGTGAT 146741743 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || ||||| || |||||||| |||||||| Sbjct 146741744 GGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 146741779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260917929440