Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-32 seq13 149 1e-31 seq16 132 8e-27 >seq5 Length=117181667 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | || || || |||||||| || ||||||||||| || || Sbjct 19720698 CGCCAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 19720757 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19720758 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19720817 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| ||| || || ||| || || Sbjct 19720818 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACGGA 19720877 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 19720878 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 19720937 Query 16672 CCG 16674 ||| Sbjct 19720938 CCG 19720940 Score = 100 bits (110), Expect = 4e-17 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | || || || |||||||| || ||||||||||| || || Sbjct 19726160 CGCCAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 19726101 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19726100 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19726041 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | ||| ||||| | ||||| ||| ||| |||| Sbjct 19726040 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCC 19726003 Score = 98.7 bits (108), Expect = 2e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | || || || |||||||| || ||||||||||| || ||| Sbjct 19527967 GCTAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 19528026 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19528027 CGCCGCCTGGCCCGGCGCGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 19528086 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | ||| ||||| | ||||| ||| ||| |||| Sbjct 19528087 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCC 19528123 Score = 96.9 bits (106), Expect = 5e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 19466371 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 19466430 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19466431 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19466490 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | ||| ||||| | ||||| ||| ||| |||| Sbjct 19466491 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCC 19466528 Score = 87.8 bits (96), Expect = 3e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | ||| || ||||||||||| || ||||||||||| || || Sbjct 19647646 CGCTAAGCGCCACCGTAAGGTTCTCCGCGATAACATCCAGGGTATCACCAAGCCCGCCAT 19647587 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 19647586 CCGCCGCCTGGCCCGGCGCGGGGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 19647527 Query 16552 TCGTGATGTTTTGAAG 16567 || | ||| ||||| Sbjct 19647526 CCGCGGTGTGCTGAAG 19647511 >seq13 Length=160222558 Score = 149 bits (164), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| || || |||||||| || |||||||| || || | Sbjct 94166336 CGCCAAGCGCCATCGCA-AGGTCTTGCGGGACAACATCCAGGGTATCACCAAACCCGCCA 94166278 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || || || |||||||| |||| || | |||| || |||| Sbjct 94166277 TCCGCCGCCTTGCTCGGCGCGGAGGTGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 94166218 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| ||||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 94166217 CGCGTGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACGCAGTCACCTACACCG 94166158 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| | |||||| | || || || | || || || | Sbjct 94166157 AGCACGCCAAGCGCAAGACTGTCACCGCTATGGATGTGGTGTACGCTCTCAAGCGCCAGG 94166098 Query 16671 GCCG 16674 |||| Sbjct 94166097 GCCG 94166094 >seq16 Length=150978388 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || ||||||||||| || |||||||| ||||| Sbjct 137811310 CGCCAAGCGACACCGCAAGGTTCTCCGCGACAACATCCAAGGCATTACCAAGCCCGCTAT 137811251 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 137811250 CCGGCGGTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGAC 137811191 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 137811190 TCGCGGTGTCCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCGGTCACCTACACCGA 137811131 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | || || || | || || || || Sbjct 137811130 GCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 137811071 Query 16672 CCG 16674 ||| Sbjct 137811070 CCG 137811068 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || || |||||||| ||||| Sbjct 137809318 CGCCAAGCGACACCGCAAGGTTCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTAT 137809259 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 137809258 CCGGCGGTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGAC 137809199 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 137809198 TCGCGGTGTCCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCGGTCACCTACACCGA 137809139 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | || || || | || || || || Sbjct 137809138 GCACGCCAAGCGCAAGACGGTCACGGCGATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 137809079 Query 16672 CCG 16674 ||| Sbjct 137809078 CCG 137809076 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || || |||||||| ||||| Sbjct 137810347 CGCCAAGCGACACCGCAAGGTTCTCCGCGACAACATCCAGGGCATTACCAAGCCCGCTAT 137810288 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 137810287 CCGGCGGTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGTCTCATCTACGAGGAGAC 137810228 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| || |||| || || || ||| ||||| Sbjct 137810227 TCGCGGTGTCCTCAAGGTTTTCCTTGAGAATGTGATCCGCGACGCGGTCACCTACACCGA 137810168 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | || || || | || || || || Sbjct 137810167 GCACGCCAAGCGCAAGACGGTCACGGCGATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 137810108 Query 16672 CCG 16674 ||| Sbjct 137810107 CCG 137810105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070259084972