Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq1874 93.3 2e-14 >seq1874 Length=4495 Score = 93.3 bits (102), Expect = 2e-14 Identities = 157/222 (71%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 7915 CTCCTGGTCGTTGACGA-GTGTTCGATGGTCGACATGCAGGTCGG-TCAAGACCTCCTCT 7972 |||||| |||| ||||| |||| ||||||||||| ||| | || || ||||| || | Sbjct 3438 CTCCTGATCGTCGACGAAGTGT-CGATGGTCGACGA-CAGTTTGGCTCGCGACCTGCTGT 3381 Query 7973 CCTTCGACGTCCCCATCCTCGTGCTCGGCGACCCGGCCCAGCTCCCGCCCGTCATGGGAG 8032 | || ||||| || |||||||| || ||||| ||||| ||||| || ||||||| || | Sbjct 3380 CGTTTGACGTTCCTATCCTCGTCCTTGGCGATCCGGCGCAGCTGCCTCCCGTCAAAGGCG 3321 Query 8033 GTGGCTTCTTCACGGAGGCCAAGCCGGACATGATGCTGACGGACATCCACCGCCAGGCCA 8092 || | |||| | || || |||| |||||| || || | || || ||||| Sbjct 3320 AGGGGTATTTCATCAACGCTGCACCCGACACGATGCTTACCGAGGTTCATCGTCAGGCGC 3261 Query 8093 AGGACAACCCCATCATCGAGATGGCGACCCGCGTCCGCGAGG 8134 ||||| || |||||| ||| | ||||||||||| Sbjct 3260 GCGACAATCCGATCATCCGCATGAGCATGGACGTCCGCGAGG 3219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203538593810840