Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3385 232 7e-56 seq17 118 1e-21 seq14 104 2e-17 seq7 89.7 5e-13 >seq3385 Length=62036 Score = 232 bits (256), Expect = 7e-56 Identities = 624/945 (66%), Gaps = 25/945 (3%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| |||||||| ||| | ||| | | | | | Sbjct 21009 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCGGTGGTTTCCGCCATGACTGCAAATC 20950 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 20949 TCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 20890 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCA-GTTCTGATAA- 21303 ||||||||||||| |||||||| | | ||| || || | | || ||| ||||| |||| Sbjct 20889 CCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCT-ATAAG 20832 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||| || |||||||| || || || || | | || || | || || || || | Sbjct 20831 TAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAG 20772 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||||| | |||| ||| ||||| | || || || || ||| |||| || Sbjct 20771 GCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGAT 20712 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGT--TTAAACATCAAACATGCA 21481 | | | || | | || || |||| | |||||||| || ||| Sbjct 20711 TTCCCTCACTCTG--TCTTCTGAAGGC---------TTGTACTGAAACATCAGGCAGGCA 20663 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || ||||| || | |||||||||||| || || | |||||| ||||| || | | ||| Sbjct 20662 AAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGC 20603 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCC 21601 || | |||||||| |||| ||| ||||||| ||||||| ||| || ||| |||| || Sbjct 20602 ATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATTCCT 20543 Query 21602 TCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 || || |||||||| || || | || ||| || | ||||||| |||| |||||| Sbjct 20542 TCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCTATCCAG 20483 Query 21662 TTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGA 21721 ||||| | || |||| |||| | | ||||| ||||| || ||||| | Sbjct 20482 CGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC-GTTAAATAA 20424 Query 21722 TGAtt--tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 ||| ||||| | | ||| | ||| ||| ||||| || | Sbjct 20423 AAATTCCCTTTTC-TTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTG 20365 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 | || | ||| || || |||||||| || || || || | ||| | | || | Sbjct 20364 AGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTGCA 20305 Query 21840 CCT-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 ||| | || ||||| || | |||||||||||||||| |||||||||||||| |||||| Sbjct 20304 CCTCCTGACTAAAA-CGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAA 20246 Query 21899 AATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAAT 21958 || || || || | ||||| || |||| | | | || ||||| | Sbjct 20245 AAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGGG 20186 Query 21959 AAATCTTTTGATAAATCTACTTCTTCAGTTGTCCA-AAAGCTAGCAATAGCCTTTTTATA 22017 | || ||||| || || || ||||| |||||| |||| | || || | ||||| Sbjct 20185 AGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGAT-GCCCGTGCTTGCTTATA 20127 Query 22018 CATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 ||| ||||||||||| ||| |||||||| || |||||||| Sbjct 20126 CATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 Score = 145 bits (160), Expect = 8e-30 Identities = 309/456 (68%), Gaps = 17/456 (4%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| |||||||| ||| | ||| | | | | | Sbjct 21551 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCGGTGGTTTCCGCCATGACTGCAAATC 21492 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 21491 TCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 21432 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA-CCCAGTTCTGATAA- 21303 ||||||||||||| |||||||| | | ||| || || | | || || |||||| |||| Sbjct 21431 CCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTT-TGAGAATCCAAGTTCT-ATAAG 21374 Query 21304 TAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 |||||| || |||||||| || || || || | | || || | || || || || | Sbjct 21373 TAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAATGAG 21314 Query 21364 TTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTAT 21423 ||||| | |||| ||| ||||| | || || || || ||| |||| || Sbjct 21313 GCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAATGAT 21254 Query 21424 ATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATGCA 21481 | | | || | | || ||| ||| | |||||||| || ||| Sbjct 21253 TTCCCTCA--CTCTGTCTTCTGAAGGCTTGTAC---------TGAAACATCAGGCAGGCA 21205 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || ||||| || | |||||||||||| || || | |||||| ||||| || | | ||| Sbjct 21204 AAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTTCAGGC 21145 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577 || | |||||||| |||| ||| |||||| ||||| Sbjct 21144 ATGAGGCCTCTCTTCTTTAGCCAGAATATTNACGCA 21109 >seq17 Length=136257712 Score = 118 bits (130), Expect = 1e-21 Identities = 304/469 (65%), Gaps = 15/469 (3%) Strand=Plus/Plus Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 || || ||||||| || ||| | || || || ||||| || || || || || || ||| Sbjct 93987687 TGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCA 93987746 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAAT 21580 || |||| ||| | || ||| | || | || || | ||| ||||| || ||||| Sbjct 93987747 TTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA- 93987805 Query 21581 GCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 ||| | || || || |||||||| || || | || ||| || |||| Sbjct 93987806 -----------GAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAG 93987854 Query 21641 GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTT--TAATACAATCA 21697 || ||||| ||| |||| ||||| | ||||| ||||| | | |||| Sbjct 93987855 GACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGC 93987914 Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNN 21757 ||||| | |||||| || || |||| | | |||| | ||| | ||| Sbjct 93987915 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCA 93987974 Query 21758 NNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAA 21817 ||| ||||||||||| ||||| ||||| || || | || || || || ||| Sbjct 93987975 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAA 93988034 Query 21818 CATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACT 21877 || | ||||||| | |||||| || |||||| | ||||||||||||| ||| Sbjct 93988035 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 93988094 Query 21878 ATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 || |||||||| || ||||| || |||| || | |||||||| || Sbjct 93988095 ATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTC 93988143 >seq14 Length=152946536 Score = 104 bits (114), Expect = 2e-17 Identities = 520/817 (64%), Gaps = 34/817 (4%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 ||| |||||| |||||| | || | ||| ||| | || | || |||| | |||| Sbjct 69609679 TTACTTAAAAGTCAGCACCCAAGGTAAAAGAATTCT-TTGTGGAATTCACATGACGCCCA 69609737 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 | ||||| || | |||| || || || || |||||||||||||| ||||| ||| Sbjct 69609738 TCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATAT 69609797 Query 21243 ATTCCATAAAATCAAATGGATTTTC-AGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| || |||||||||||| | | ||| || || ||| ||||||| || | Sbjct 69609798 TTTCCATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACCCAGCTC-CAG 69609856 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||||| || |||||||| || || || ||| || || ||||| |||| Sbjct 69609857 CATAAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGAT 69609916 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGAT----TTTTCTAT-AGAGACGGCTTCA 21415 | | ||||| | || || | | ||| | ||||| || | | Sbjct 69609917 GAGCATCACAGGCAAGGC----CTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGTTG 69609972 Query 21416 ACAATTATATTTATTA----TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACAT 21471 ||||| | | ||| | | |||| || | | ||| | || || ||||| Sbjct 69609973 GTGATTATTTCTTTTACTCTGCTTCGATG-GCTTGTG---TAC--CAGGTGCTTGAACAT 69610026 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 || | |||| || || || ||||| | || || || || | ||||| |||||||| Sbjct 69610027 CAGGTAGACAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGT 69610086 Query 21532 TAAACCGGGCATTAATCCTCTCTTT-TTTAACCAAAATATTGACGCAAATGCTCCTG-AA 21589 || |||| | | || || ||| || | ||| ||||| || ||||| | || | || Sbjct 69610087 AGGGCCCGGCA-TCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAA 69610145 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 ||||| || | || || | ||||| || || | |||||| | |||||| |||||| Sbjct 69610146 AAGAAGATTGCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTG 69610205 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 ||| |||| | ||||| | ||||| || ||| | ||||| |||||| Sbjct 69610206 TCCCCAGTCCAATGCAAGGCCCAGTCAGCCTTCTC------ACAGGC-ATTGTTTCAATA 69610258 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || || ||||||| | | |||| | ||| | ||| ||| Sbjct 69610259 GCATTGAAAAGATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTG 69610318 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||||| ||| ||||| |||| | | | | || || | |||||||| |||||| Sbjct 69610319 TACATTTTAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCAT-AAAACATCCAGCCTCT 69610377 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | |||||| || |||||| | |||||||| | || | ||| |||||||| Sbjct 69610378 GTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTC 69610437 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 || ||||| || |||| | || |||||||| || Sbjct 69610438 GCTGCAAAGAAAGCCAGAACATGAGCTATAAAATTTC 69610474 >seq7 Length=104786220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||||| ||| | ||| | | | | | Sbjct 35863357 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATC 35863416 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 35863417 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 35863476 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 35863477 CCATAAAATCAAAGGGATTTTC 35863498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||| ||||| ||||| || | ||| ||||||||| ||| | ||| | | | | | Sbjct 35863689 TTTAGAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCGGCCATGACTGCAAATC 35863748 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| ||||| || | Sbjct 35863749 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTCT 35863808 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 35863809 CCATAAAATCAAAGGGATTTTC 35863830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531864870100960