Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3385 324 2e-83 seq17 266 4e-66 seq14 239 6e-58 seq4 114 2e-20 seq7 111 2e-19 seq18 107 2e-18 seq3 95.1 2e-14 >seq3385 Length=62036 Score = 324 bits (358), Expect = 2e-83 Identities = 607/891 (68%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||| | | | | || || ||| || ||||| || || ||||| ||||| ||||| Sbjct 20963 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 20904 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 ||||| || || ||||| |||||||| ||||| | | | |||| ||| ||||| Sbjct 20903 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 20844 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | ||| || ||||| || || || || || || || |||| ||| || | || Sbjct 20843 AAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTT 20784 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||||| || || ||| || | || | || | ||| || || ||||| || || Sbjct 20783 AATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGC 20724 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 33299 ||| | || || || || | ||||| || | || | || |||||| Sbjct 20723 ATCAGCAATGATTTCCCTCACTCTGTCTTC------TGAAGGCTTGTACTG---AAACAT 20673 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || || || || || ||||| ||||| || || || || || ||||| || ||||| || Sbjct 20672 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 20613 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| | ||||| ||||| | ||| || ||||| ||||| | ||| ||||||||||| || Sbjct 20612 CAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 20553 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTC 33476 | | |||||||| || ||||||||||| | | ||| || ||| || | || || Sbjct 20552 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 20493 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||| ||||||| || || || || || ||| | ||||| ||||| || || Sbjct 20492 TGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 20433 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 ||||| | | | | ||| || |||| | | ||||| || || | | ||| || Sbjct 20432 GTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTA 20373 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || |||| || || ||| |||||||| || ||||| || || ||| | Sbjct 20372 CATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGG 20313 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 || ||| || || || ||| || ||| |||| |||||||| || ||||| |||||||| Sbjct 20312 AACCTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGC 20253 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||||||| || || | || ||||| || || ||||| | | | || || ||||| Sbjct 20252 TGCAAAAAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCA 20193 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | || || || || | || || ||||| ||||||| || |||||| ||| | Sbjct 20192 GTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTG 20133 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCT 33887 |||||||| ||||||| ||| ||| |||||||| || || ||||| || Sbjct 20132 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq17 Length=136257712 Score = 266 bits (294), Expect = 4e-66 Identities = 631/943 (67%), Gaps = 33/943 (3%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| ||| || | |||| ||| ||| || | ||||| |||||||| | Sbjct 93987351 TTAGAAGTCAGCATGCAAGGTAAAAGAATTCTCTGTCAAATTCGACATGACTCCCATCCT 93987410 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || | || || || || | ||||||||||| | ||| |||||||| Sbjct 93987411 CTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAATATTTTC 93987470 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCA---GAAAT 33131 |||||| ||||| ||||| || | |||| || |||| |||| || | || Sbjct 93987471 CATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCCAGCTCCAGTGGAAG 93987530 Query 33132 CAATCTATCCGCGACGAA-TTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 | || || || | || ||| || || ||||||| |||||| || | | Sbjct 93987531 C---CTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGCCCCGAAGA 93987587 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGT-TATA 33249 | || || || | |||| | || ||||| || || | || || | | || | | Sbjct 93987588 GCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGTTTT 93987647 Query 33250 ATAGATCTAACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 || | | || |||| || || | | | | || | | || || ||||||| || || Sbjct 93987648 ATTTCTTTTACTGTTTGCTCCAATGGCTTG-TGTACCAGGTGCTTGAACATCAGCCAGGC 93987706 Query 33309 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGG 33368 | || ||||| | |||||||||||| ||||| | || ||||||| || || || Sbjct 93987707 AGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTGGAAAGTGTAAGGCCCAA 93987766 Query 33369 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCC 33428 ||| || | || || || ||||| ||||| || || |||||||| ||| Sbjct 93987767 CATCAGTCTGCGATTCTTGAGCCAGAATATCGATGC------------AAAGAAGACTCC 93987814 Query 33429 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCA 33485 ||| || ||||||||||| | || || |||||||| || | |||| |||| Sbjct 93987815 TTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGACTCTTTGTCCCCAGTCCA 93987874 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTT---ACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||||| || |||||||| || ||||||||||| |||| || ||||| || Sbjct 93987875 ACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAA 93987934 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 |||||| | | |||| || |||||||| || || || || | |||| |||||||| Sbjct 93987935 GAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATAAGGGGACTGTACATTTC 93987994 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 || || |||||||| ||||| | || || || |||||||| | ||||| |||| || Sbjct 93987995 AGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTG 93988054 Query 33663 TACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33722 |||||| | |||||| ||| |||| |||||||| ||||| || ||||| |||||||| Sbjct 93988055 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCGCTGCAAA 93988114 Query 33723 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33782 || |||| | || |||||||| | | || || || | || | ||| | | Sbjct 93988115 GAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGTTTCAGAGCTTCCCAGTGTTG 93988174 Query 33783 GATATCTTTAGATATATCTA-CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 ||| | || || | || | |||||| | |||||||| || ||||| || || || | Sbjct 93988175 AATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 93988233 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||| | |||||| |||| |||| || || || | |||||| Sbjct 93988234 ACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAAA 93988276 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 91856955 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 91856896 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 91856895 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 91856836 Query 62457 CTATTTCTAAGACCGTA 62473 || || || | ||| || Sbjct 91856835 CTGTTCCTTATACCATA 91856819 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||||| |||| || || || || || | || || ||||||||||| || || || | Sbjct 91853968 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 91853909 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 91853908 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 91853849 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || || || | | || || || || || ||||| ||||| || ||||| || || || Sbjct 91853848 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGA 91853789 Query 62748 CTATGTCTCTTATTAGA 62764 | ||| | ||||| || Sbjct 91853788 CGATGGCGTTTATTTGA 91853772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||| || | || | || || ||||| || | |||||||| || || || ||| Sbjct 91844438 CTAGACAGCTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAAC 91844379 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || || ||||||||||| ||||| || ||||| || | || ||||| || ||||| Sbjct 91844378 CACTTCTCAGAAAGTAGGTTGTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATC 91844319 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || || | || | ||| ||||| ||||| ||||||||| Sbjct 91844318 CCCACAGAAACCCTCATCAACATATGCTGTGGTCTTTCA 91844280 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 91860047 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 91859988 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || || ||||||||||| || || || || || ||||| || | | |||| Sbjct 91859987 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 91859928 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 91859927 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 91859877 >seq14 Length=152946536 Score = 239 bits (264), Expect = 6e-58 Identities = 618/928 (67%), Gaps = 28/928 (3%) Strand=Plus/Plus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG---ACATAACTCCCATTTT 33014 |||||||||| || | || | |||| ||| | || | || |||| || ||||| Sbjct 69609683 TTAAAAGTCAGCACCCAAGGTAAAAGAATTCT-TTGTGGAATTCACATGACGCCCATCCA 69609741 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| ||||| |||||||| Sbjct 69609742 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTTTC 69609801 Query 33075 CATGAAATCAAACGGATTGGTAACATT-ATAAAtttttttAAATCCCAATTCAGAAATCA 33133 |||||| ||||| ||||| || | |||| || ||||| |||| || || | Sbjct 69609802 CATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACCCAGCTCCAGCATAA 69609861 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 ||||| || || ||||| || || ||||||| || ||||| | || || Sbjct 69609862 GCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGAGCA 69609921 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA-CCGCATCTGTTATAATA 33252 | || || | ||| | | || | | || || || || || | | || || || Sbjct 69609922 TCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGTTGGTGATTATT 69609981 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 | | || | |||| | | | | || | | || || ||||||| | | || Sbjct 69609982 TCTTTTACTCTG-CTTCGATGGCTTG-TGTACCAGGTGCTTGAACATCAGGTAGACAAAG 69610039 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||||| | ||||| |||||| ||||| || || |||||||| || | || ||||| Sbjct 69610040 TCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAGGGCCCGGCATC 69610099 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA-GAAGATTCCTTC 33431 || || | || || ||||| ||||| || || || || |||||||| ||||||| |||| Sbjct 69610100 AGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGCTTC 69610159 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33488 ||| | |||||||| | || || ||| |||| | | | |||| |||| | Sbjct 69610160 TACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTCCCCAGTCCAATG 69610219 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||| || ||||||| ||| |||||| ||||| || ||||| || ||||| Sbjct 69610220 CAAGGCCCAGTCAGCCTTCT------CAC-AGGCATTGTTTCAATAGCATTGAAAAGATA 69610272 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | | |||| || |||||||| ||| | || || | ||||| ||||||| || || Sbjct 69610273 TTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTACATTTTAGAGTG 69610332 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || |||| || | | | || || || ||||||| |||||| |||| || ||||| Sbjct 69610333 TATCCTTTCCCTGCCAGTTTAGAAGCCATA-AAACATCCAGCCTCTGTAACTTGAACTTC 69610391 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | |||||| ||| |||| ||| | || | ||| || ||||| |||||||| || || Sbjct 69610392 TTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGCAAAGAAAGC 69610451 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || ||||| |||||||| | | || | | || |||| | |||| || Sbjct 69610452 CAGAACATGAGCTATAAAATTTCTGTCAT------TCAG-AGCTTCCCAGTGCTGATCTC 69610504 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 || || | || || || || | |||||||| | ||||| || || || ||||| | Sbjct 69610505 CTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTACATCTG 69610564 Query 33849 CCAGATGTCATAATATTGGATTGGGAAA 33876 |||||| |||| || | || ||||||| Sbjct 69610565 CCAGATATCATGGTACTAGA-TGGGAAA 69610591 >seq4 Length=114123490 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || |||||||||||||||||||| || ||||||| Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 33446 C 33446 | Sbjct 16582829 C 16582829 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 16584336 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 16584277 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 16584276 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 16584217 Query 33075 CATGAAATCAAACGGATT 33092 |||||| ||||||||||| Sbjct 16584216 CATGAAGTCAAACGGATT 16584199 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 16585149 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 16585090 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 16585089 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 16585030 Query 33075 CATGAAATCAAACGGATT 33092 |||||| ||||||||||| Sbjct 16585029 CATGAAGTCAAACGGATT 16585012 >seq7 Length=104786220 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| ||||||||||| ||||| |||||||| || ||||||||||| Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 >seq18 Length=130317789 Score = 107 bits (118), Expect = 2e-18 Identities = 292/446 (65%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 80720 CATCATGAACGGCGGACATATTCAGTTGATAATCGGCCCCATGTTTTCAGGTAAAAGTAC 80779 || || || | | || || |||||| |||| |||| |||||||| ||||| ||||| || Sbjct 127349086 CAGCAAGACCCGGGGGCAGATTCAGGTGATTTTCGGGCCCATGTTCTCAGGGAAAAGCAC 127349027 Query 80780 AGAATTAATTAGACGAGTTAGACGTTATCAAATAGCTCAATATAAATGCGTGACTATAAA 80839 || | || ||| |||| || || | || || || || || || ||| || || || Sbjct 127349026 GGAGCTGATGAGAAGAGTCAGGCGCTTCCAGATCGCCCAGTACAAGTGCCTGGTCATCAA 127348967 Query 80840 ATATTCTAACGATAATAGATACGGAACGGGACTATGGACGCATGATAAGAATAATTTTGA 80899 ||| | || || | | || | | | | | || |||||| ||| | | || Sbjct 127348966 GTATGCCAAAGACACGCGCTATAGCAACAGCTTCTCCACACATGATCGGAACACCATGGA 127348907 Query 80900 AGCATTGGAAGCAACTAAACTATGTGATGT---CTTGGAATCAATTACAGATTTCTCCGT 80956 |||||| ||| || | ||||| | ||| || | | | | |||| Sbjct 127348906 CGCATTGCCAGCCTGCCTGCTCCGCGATGTGACCCAGGAGTCCTTG---GGTGTGGCCGT 127348850 Query 80957 GATAGGTATCGATGAAGGACAGTTCTTTCCAGACATTGTTGAATTCTGTGAGCGTATGGC 81016 || || ||||||||||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct 127348849 CATTGGCATCGATGAAGGGCAGTTTTTTCCTGACATTGTGGATTTCTGTGAAATGATGGC 127348790 Query 81017 AAACGAAGGAAAAATAGTTATAGTAGCCGCACTCGATGGGACATTTCAACGTAAACCGTT 81076 ||||| || || | ||| || || || ||||| |||||||| || || | || | || Sbjct 127348789 CAACGAGGGCAAGACAGTAATTGTGGCAGCACTGGATGGGACTTTCCAGAGGAAGGCTTT 127348730 Query 81077 TAATAATATTTTGAATCTTATTCCATTATCTGAAATGGTGGTAAAACTAACTGCTGTGTG 81136 | || ||||| || | || | | || | ||||| || || || |||||||| Sbjct 127348729 CGGCAGCATCTTGAACCTGGTGCCCCTGGCGGAGAGTGTGGTGAAGCTCACCGCTGTGTG 127348670 Query 81137 TATGAAATGCTTTAAGGAGGCTTCCT 81162 ||| | |||||| || ||| ||| Sbjct 127348669 CATGGAGTGCTTTCGAGAAGCTGCCT 127348644 >seq3 Length=125065471 Score = 95.1 bits (104), Expect = 2e-14 Identities = 230/344 (67%), Gaps = 16/344 (5%) Strand=Plus/Plus Query 166008 TTTACCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAGTA 166067 ||| | ||||| | || ||||||||||||||||| | ||| || || || || | Sbjct 83528706 TTTGCAAACACTGATGGGGGATATTTGTTCATTGGCTTGGATGGCAAAACGCAGCAAATT 83528765 Query 166068 ATTGGATTC-ACGGTGGGTCATGA-CTACCTCAGACTGGTAGAGAATGATATAGAAAAGC 166125 ||||| || | | | | | || | | ||| || |||||| ||| ||||||||| Sbjct 83528766 ATTGGTTTTGAAGCAGAG--AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT 83528823 Query 166126 ATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACACGT 166185 ||| || || | ||| || ||||||||| |||| ||| | ||||||||||||| Sbjct 83528824 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACACGT 83528883 Query 166186 GTCGATTCATCAAGGTATATAAACCTGGGGATGAGGCTACCTCGACATACGTGTGCGCTA 166245 | ||||||| | || | ||| | || | || | | |||| |||||||| | Sbjct 83528884 GCAAATTCATCGAAGTGCACAAATCCGGAGCTGTG------TGTGCATATGTGTGCGCGA 83528937 Query 166246 TCAAAGTGGAAAGATGCTGTTGTGCTGTGTT---TGCAGATTGGCCAGAATCATGGTATA 166302 ||| |||||| | | ||| ||||| ||||| |||||| ||| || || ||| | Sbjct 83528938 TCAGAGTGGAGAAGTTCTGCTGTGCAGTGTTCGCTGCAGA---GCCTGAGTCCTGGCACG 83528994 Query 166303 TGGATACTAATGGTATCAAGAAGTATTCTCCAGATGAATGGGTG 166346 |||| | || | |||| || | | |||| ||||||||| Sbjct 83528995 TGGAAGGCAGCTGTGTGAAGAGGTTTACCACAGAGGAATGGGTG 83529038 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/304 (67%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 166006 CTTTTACCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAG 166065 ||||||||||||| | || ||||||||||||||||| | ||| || || || || Sbjct 83590141 CTTTTACCAACACTGAAGGGGGATATTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAA 83590200 Query 166066 TAATTGGATTCACGGTGGGTCATGACTACCTCAGACTGGTAGAGAATGATATAGAAAAGC 166125 | ||||| || | | | || | ||| || |||||| ||| ||||||||| Sbjct 83590201 TTATTGGTTTTGAAGCAGAGAAGAACGATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT 83590260 Query 166126 ATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACACGT 166185 ||| || || | ||| || ||||||| |||||| ||| | || || ||||| | Sbjct 83590261 GCATCCAACAGCTGCCTGTCACTCACTTCTGTGGGAAGAAGGAGAAGATAAAATACACAT 83590320 Query 166186 GTCGATTCATCAAGGTATATAAACCTGGGGATGAGGCTACCTCGACATACGTGTGCGCTA 166245 | ||||||| | || | ||| | || | || | | |||| ||||| || Sbjct 83590321 GCAAATTCATCGAAGTGCACAAATCCGGAGCTGTG------TGTGCATATGTGTGTGCGC 83590374 Query 166246 TCAAAGTGGAAAGATGCTGTTGTGCTGTGTT---TGCAGATTGGCCAGAATCATGGTATA 166302 ||| |||||| |||| ||| ||||| ||||| |||||| ||| || || ||| | Sbjct 83590375 TCAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGA---GCCCGAGTCCTGGCACG 83590431 Query 166303 TGGA 166306 |||| Sbjct 83590432 TGGA 83590435 Score = 89.7 bits (98), Expect = 6e-13 Identities = 206/306 (67%), Gaps = 16/306 (5%) Strand=Plus/Plus Query 166006 CTTTTACCAACACAAAGGGTGGATATTTGTTCATTGGAGTTGATAATAATACACACAAAG 166065 ||||| | ||||| | || |||| |||||||||||| | ||| || || || || Sbjct 83413526 CTTTTGCAAACACGGATGGGGGATTTTTGTTCATTGGTTTGGATGGCAAAACCCAGCAAA 83413585 Query 166066 TAATTGGATTC-ACGGTGGGTCATGA-CTACCTCAGACTGGTAGAGAATGATATAGAAAA 166123 | ||||| || | | | | | || | | ||| || |||||| ||| |||||||| Sbjct 83413586 TTATTGGTTTTGAAGCAGAG--AAGAGCGATCTCGTGCTTCTAGAGAGTGAAATAGAAAA 83413643 Query 166124 GCATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACAC 166183 ||| ||| || | ||| || ||||||||| |||| ||| | ||||||||||| Sbjct 83413644 GCACATCCGGCAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAAGATCAAGTACAC 83413703 Query 166184 GTGTCGATTCATCAAGGTATATAAACCTGGGGATGAGGCTACCTCGACATACGTGTGCGC 166243 ||| ||||||| | || | ||| | || | || | | |||| ||||| || Sbjct 83413704 GTGCAAATTCATCGAAGTGCACAAATCCGGAGCTGTG------TGTGCATATGTGTGTGC 83413757 Query 166244 TATCAAAGTGGAAAGATGCTGTTGTGCTGTGTT---TGCAGATTGGCCAGAATCATGGTA 166300 ||| |||||| |||| ||| ||||| || || |||||| ||| || || ||| | Sbjct 83413758 GCTCAGAGTGGAGAGATTCTGCTGTGCAGTATTCGCTGCAGA---GCCCGAGTCCTGGCA 83413814 Query 166301 TATGGA 166306 | |||| Sbjct 83413815 TGTGGA 83413820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905119916640