Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18 143 7e-29 seq17 109 1e-18 seq3385 87.8 5e-12 seq7 84.2 6e-11 >seq18 Length=130317789 Score = 143 bits (158), Expect = 7e-29 Identities = 413/628 (66%), Gaps = 12/628 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || |||||||| || ||| | |||||||| || | || || | ||||| Sbjct 85150948 TTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGG 85151007 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||| | | | || || | ||| |||||| Sbjct 85151008 TTTATCAAGGGATCCACAAATGCTAAAGAATTGTCCTCCAAGGGAGTGAGAATCTGGGAT 85151067 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGTCGACAACGA-AGAA-GGT 111491 | |||||||| || |||||||| || ||| |||| || || | ||| |||| || Sbjct 85151068 GCCAATGGATCCCGAGACTTTCTGGA--CAGCTTGGGATTTTCTGCC-CGACAGAAAGGG 85151124 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 || || || |||||||| || || |||||| | || ||||| ||||| |||||| ||| Sbjct 85151125 GACCTGGGCCCAGTTTATGGTTTCCAATGGAGGCATTTTGGAGCAGAGTACAAAGATATG 85151184 Query 111552 CACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATT 111608 || ||| || | | ||| ||| || || | || || | ||||| || Sbjct 85151185 ---GATTCAGATTACCCGGGACAAGGAGTAGACCAGCTGCAAAAAATGATTGACACCATC 85151241 Query 111609 AAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAA 111668 || | |||||| | | | || || ||| |||| ||||||||||| | | Sbjct 85151242 AAAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCC 85151301 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||||| || || || ||| | || ||||| ||||| | ||| ||| Sbjct 85151302 CTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAGTTCTATGTGGTGAATGGGGAGCTG 85151361 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || |||||| | || ||| | || | ||||| ||||| || || || || || ||||| Sbjct 85151362 TCTTGCCAACTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCTTTCAACATTGCC 85151421 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTC 111848 || || || || || || | | | || || ||| | ||| ||| | || ||||| || Sbjct 85151422 AGCTATGCTCTGCTCACCTACATGATTGCACATATCACAGGTCTGCAGCCAGGTGATTTT 85151481 Query 111849 ATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAG 111908 | ||| | | |||||||| ||| ||||| || || || || | || |||| ||| Sbjct 85151482 GTCCACACTTTGGGAGATGCACATATTTACCTGAATCATATAGAGCCGCTGAAAATTCAG 85151541 Query 111909 TTGAAGCGCAAACCATACGATTTCCCAA 111936 | |||| ||||| |||||||| Sbjct 85151542 CTACAGCGAGAACCAAGACCTTTCCCAA 85151569 >seq17 Length=136257712 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || || || || ||| Sbjct 91852559 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCCCAGACGGAGACCGGCACCCCATACATG 91852618 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || ||||| ||| |||||||||| |||| || || ||| | Sbjct 91852619 CTCTACAAAGATTCCTGTAACCGGAAGAGCAACCAGCAGAACCTGGGAACCATTAAATGC 91852678 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || |||||| Sbjct 91852679 AGCAACCTGTGTACAGAAATAGTAGAGTACACC 91852711 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| ||| ||||||||||| || || |||||| || || || |||||||| | Sbjct 91850414 AGCGCCCAGGCGCGTTTGCTATTTACCTGGAGCCTTGGCACTTAGACATCTTTGAGTTCC 91850473 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 |||| | ||| ||||| || || || ||| ||| ||||| ||||| |||| ||||| Sbjct 91850474 TTGACTTGAAGAAGAACACAGGCAAGGAAGAACAGCGAGCACGCGATCTCTTCTTTGCAC 91850533 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| | | || | || |||||||| |||||| Sbjct 91850534 TTTGGATCCCAGATCTCTTCATGAAGCGAGTGGAG 91850568 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || || ||||||| | || || ||||| |||||||| Sbjct 91859861 CAGAGCATACCAGAAATTCCTGATGACCTGAAGCAACTCTATAAGACCGTGTGGGAAATC 91859920 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | ||| | | | ||||| ||||| | |||||||| ||| |||||||||| Sbjct 91859921 TCTCAGAAGACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATCGATCAGAGCCAG 91859980 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | || || |||| | || || ||| || || ||||| |||||| Sbjct 91859981 TCTTTAAACATCCATATTGCTGAGCCCAACTACGGCAAACTCACTAGTATGCACTTCTAC 91860040 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 91860041 GGTTGGAA 91860048 >seq3385 Length=62036 Score = 87.8 bits (96), Expect = 5e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||| ||| |||||| ||||| |||||| || |||||| Sbjct 20526 GCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCTA 20585 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || | | | ||||| | || || ||||||||||| | || ||| | ||||| Sbjct 20586 AAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAA 20645 Query 22621 GGTCTTCA 22628 |||||||| Sbjct 20646 GGTCTTCA 20653 >seq7 Length=104786220 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| |||||||| |||||| ||||| |||||| || |||||| Sbjct 35874049 GCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCTGGCTA 35873990 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || || | | | ||||| || || || ||||||||||| | || ||| | ||||| Sbjct 35873989 AAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGGATGA 35873931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303263357425928