Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq15 109 5e-19
seq3 109 5e-19
seq17 86.0 6e-12
>seq15
Length=152823684
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
||| ||||| || || ||||||||||| || |||||| || || |||||||||||
Sbjct 125084974 GGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCC 125085033
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| |||| | | ||||||||| || ||||| || || ||||| ||| || |||
Sbjct 125085034 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 125085093
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216
|| | ||| | || || ||| ||||| || | ||| | ||| ||||| |||| ||
Sbjct 125085094 GACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGT 125085153
Query 131217 TTTTACGAAAATCTGCAT 131234
||| || || ||||||||
Sbjct 125085154 TTTCACAAAGATCTGCAT 125085171
>seq3
Length=125065471
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| | || ||| || || | || | ||||||||| || || |||||||||||
Sbjct 62144674 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 62144615
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| || |||||||||||||| || |||| | | ||||||||| || ||
Sbjct 62144614 GAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGG 62144555
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
||| || ||||| || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 62144554 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 62144495
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || ||||| ||||||||
Sbjct 62144494 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62144447
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | || ||| || || | || | ||||||||| || || |||||||||||
Sbjct 62144903 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 62144844
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || |||||||||||||| || |||| | | ||||||||| || |
Sbjct 62144843 AGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 62144784
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|||| || ||||| || ||| || ||| | | ||| | || || ||| ||| |
Sbjct 62144783 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 62144724
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | ||| | ||| || || || || || || ||||| |||||||||
Sbjct 62144723 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/234 (70%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||| || | ||||||||| | || | ||| ||||| || || |||||||||
Sbjct 98064586 ATGATGCCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAA 98064645
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| || |||| | ||||||||||| ||||| ||| | || | | |||||||||
Sbjct 98064646 TCAGACAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCA 98064705
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181
|| |||| || || ||||| ||| || ||| | | ||| | || || ||| |
Sbjct 98064706 GGTGGGAGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGC 98064765
Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235
|| | || | || | ||| || || | || || || ||||| |||||||||
Sbjct 98064766 TCTACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819
>seq17
Length=136257712
Score = 86.0 bits (94), Expect = 6e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | ||| || || | |||| ||||| ||||| ||||||||||| || ||||| |
Sbjct 91852709 TGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTAATGGTTCCCAGGTTCTGCTGGT 91852650
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| || |||| ||| || | || |||||||||||||| || ||| |||||| ||| |
Sbjct 91852649 TGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCGGTCTCCGTCTGGG 91852590
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 91852589 ACTCAATGAT 91852580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471980915535360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |