Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq3 109 5e-19 seq17 86.0 6e-12 >seq15 Length=152823684 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||| || || ||||||||||| || |||||| || || ||||||||||| Sbjct 125084974 GGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCC 125085033 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| || ||||| || || ||||| ||| || ||| Sbjct 125085034 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 125085093 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | ||| | || || ||| ||||| || | ||| | ||| ||||| |||| || Sbjct 125085094 GACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGT 125085153 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| || || |||||||| Sbjct 125085154 TTTCACAAAGATCTGCAT 125085171 >seq3 Length=125065471 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 62144674 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 62144615 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || |||||||||||||| || |||| | | ||||||||| || || Sbjct 62144614 GAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGG 62144555 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || ||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 62144554 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 62144495 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 62144494 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62144447 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||| || || | || | ||||||||| || || ||||||||||| Sbjct 62144903 AGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 62144844 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || |||||||||||||| || |||| | | ||||||||| || | Sbjct 62144843 AGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 62144784 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || ||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 62144783 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 62144724 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 62144723 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| || | ||||||||| | || | ||| ||||| || || ||||||||| Sbjct 98064586 ATGATGCCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAA 98064645 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || |||| | ||||||||||| ||||| ||| | || | | ||||||||| Sbjct 98064646 TCAGACAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCA 98064705 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || |||| || || ||||| ||| || ||| | | ||| | || || ||| | Sbjct 98064706 GGTGGGAGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGC 98064765 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || | ||| || || | || || || ||||| ||||||||| Sbjct 98064766 TCTACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819 >seq17 Length=136257712 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| || || | |||| ||||| ||||| ||||||||||| || ||||| | Sbjct 91852709 TGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTAATGGTTCCCAGGTTCTGCTGGT 91852650 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || |||| ||| || | || |||||||||||||| || ||| |||||| ||| | Sbjct 91852649 TGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCGGTCTCCGTCTGGG 91852590 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 91852589 ACTCAATGAT 91852580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471980915535360