Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 >seq3 Length=125065471 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | ||| | | || Sbjct 62144658 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCT 62144599 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||||||| | || |||| ||| ||||| || | ||||||||| || Sbjct 62144598 TCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 62144539 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 62144538 TGGATCTTGGC--CTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 62144481 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| || || || || |||||||||||| Sbjct 62144480 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 62144443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405061320397960