Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq12 127 1e-24 seq18 123 2e-23 seq11 122 6e-23 seq6 122 6e-23 seq5 122 6e-23 seq14 118 7e-22 seq9 118 7e-22 seq4 118 7e-22 seq1 118 7e-22 seq17 113 3e-20 seq16 105 4e-18 seq15 104 2e-17 seq3 91.5 1e-13 seq8 87.8 1e-12 >seq12 Length=182815943 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2434347 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2434406 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2434407 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2434441 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| | Sbjct 2435810 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGC 2435869 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 2435870 TCATCCATTCATGAGCGTCACTAATTAGATGACGA 2435904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 8/86 (9%) Strand=Plus/Plus Query 19941 TCATTT---CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTAT 19997 |||||| |||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct 20349291 TCATTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGAATTT 20349350 Query 19998 CGGTCTCG--CGGTAATATTTAGCCT 20021 |||||||| ||| |||||||||| Sbjct 20349351 CGGTCTCGGCCGG---TATTTAGCCT 20349373 >seq18 Length=130317789 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 119354936 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 119354877 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||||||||||||||||||||| Sbjct 119354876 TCATCCGTTCATGCGCGTCACTAATTAGATGAC 119354844 >seq11 Length=59623150 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || |||||||| ||||| || |||||||| Sbjct 19779026 AAGCCCGTTCCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 19778967 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 19778966 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 19778932 >seq6 Length=117542938 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 46774953 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 46775012 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 46775013 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 46775047 >seq5 Length=117181667 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||||||||||| | |||||||| ||||| ||||||||||| Sbjct 109666720 AAGTCCGTTCCCTTGGCTGTGGTTTCGATGGATAGTAGGTAGGGACAGTGGTAATCTCGT 109666779 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 109666780 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 109666814 >seq14 Length=152946536 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||| ||||||||||||| |||||||| ||||| || |||||||| Sbjct 42739747 AAGCCTGTTCCCTTGACTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 42739806 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 42739807 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 42739841 >seq9 Length=94415995 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 84306952 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 84307011 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 84307012 TCATCCATTCATGCGCATCACTAATTAGATGACGA 84307046 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| || || || ||||| || Sbjct 3896549 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAAGGACAGTGGGAATCTTGT 3896490 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 3896489 TCATCCATTCATGCGCATCACTAATTAGATGACGA 3896455 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| || |||||| | Sbjct 80791510 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 80791569 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | |||||||||| ||||| || Sbjct 80791570 TCATCCATTCATGTGTGTCACTAATTGGATGAAGA 80791604 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 9/95 (9%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| ||||| |||| || ||||||| |||| || |||||| Sbjct 21429243 AAGCCCGTTCCCTTGCCTGTGTTTTCTCTGGATAGTATGTAGGAACAGTGGGAATCTC-- 21429186 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 21429185 --ATCCATTCATGCGCGTCACTAATTAGATGACGA 21429153 >seq4 Length=114123490 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| || || || |||||||| Sbjct 74022511 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAAGGACAGTGGGAATCTCGT 74022570 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||||||||| Sbjct 74022571 TCATCCATTCATGCGCGTCACTAGTTAGATGACGA 74022605 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| || || || |||||||| Sbjct 74024167 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAAGGACAGTGGGAATCTCGT 74024226 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||| ||||||||||| Sbjct 74024227 TCATCCATTCATGCGCGTCACTAGTTAGATGACGA 74024261 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| || Sbjct 95319504 AAGCCGGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 95319445 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 95319444 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 95319410 >seq1 Length=198846266 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 194534132 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 194534073 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||||||| Sbjct 194534072 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 194534038 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| ||||||| ||||| || |||||| | Sbjct 113874754 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGAATAGTAGGTAGGGACAGTGGGAATCTCAT 113874813 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||||||| Sbjct 113874814 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 113874848 >seq17 Length=136257712 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||| | || |||||| | Sbjct 110362939 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGAACAGTGGGAATCTCAT 110362998 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||||||| Sbjct 110362999 TCATCCATTCATTCGCGTCACTAATTAGATGACGA 110363033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| |||||| || |||||||||||| ||||| ||||||||| || | || Sbjct 39746522 CAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 39746463 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || || Sbjct 39746462 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 39746403 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| |||| || || || Sbjct 39746402 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGT 39746343 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| ||||| | |||||||| Sbjct 39746342 TTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq16 Length=150978388 Score = 105 bits (116), Expect = 4e-18 Identities = 78/91 (86%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25906 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAAT 25960 || |||||||||||||||||||||| |||||||| ||||| || ||||||||| || Sbjct 134483242 CCTTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCAT 134483183 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||||||| |||||||||||||||| || Sbjct 134483182 CCATTCATGCGAGTCACTAATTAGATGATGA 134483152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||||| |||||| ||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 3200040 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGTCCATC 3200099 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| | || | || ||||| | | ||| | | || || Sbjct 3200100 TTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAG-GAGGAAGTC----TTATC 3200154 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || ||| |||||| | | ||| || || Sbjct 3200155 CTGGATCTTGGCCTTTACATTTTCTATAGAGTCTGAGGGTTCAACCTGGAGTGTGATGGT 3200214 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| ||||| | ||| ||||| || |||||||| Sbjct 3200215 TTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 3200247 >seq15 Length=152823684 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 147005581 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 147005522 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 147005521 GCCGGTATTTAGCCTTA 147005505 >seq3 Length=125065471 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || || ||| || || || ||||||||||| Sbjct 62144901 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 62144842 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || |||| || || |||||||| || || | || || || | |||| Sbjct 62144841 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 62144782 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||| ||| || || ||||||||||| || || || | || || Sbjct 62144781 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 62144722 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| |||||||| ||||||||| Sbjct 62144721 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | ||||| ||||| || | ||| ||| || || || |||||||||||| Sbjct 98064592 CCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 98064651 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || |||| ||||| ||||| ||||| || | || || || | ||| Sbjct 98064652 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 98064711 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || || ||| ||||||| || || || | || || Sbjct 98064712 AGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACC 98064771 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||| ||| ||| |||||||| ||||||||||| Sbjct 98064772 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATGTT 98064821 >seq8 Length=97876770 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| Sbjct 1158145 CTCTCTCTTCAAAGGTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTC 1158202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925139958724