Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3385 311 1e-79 seq17 293 3e-74 seq4 111 2e-19 seq7 107 2e-18 >seq3385 Length=62036 Score = 311 bits (344), Expect = 1e-79 Identities = 603/891 (68%), Gaps = 12/891 (1%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| ||| | | | | || || ||| || ||||| || || ||||| ||||| ||||| Sbjct 20963 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 20904 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 |||||| || || ||||| ||||| || ||||| | | | |||| ||| ||||| Sbjct 20903 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 20844 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 | ||| || ||||| || || ||||| || || || |||| ||| || | || Sbjct 20843 AAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTT 20784 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||||| || || ||| || | || | || | ||| || || ||||| || || Sbjct 20783 AATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGC 20724 Query 32597 GTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACAT 32656 || | || || || ||| | ||||| || ||| | |||||| Sbjct 20723 ATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTAC---------TGAAACAT 20673 Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || || || || || ||||| ||||| || || || || || | ||| || ||||| || Sbjct 20672 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 20613 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| | ||||| ||||| | ||| || ||||| ||||| | |||||||||||||| || Sbjct 20612 CAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 20553 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTC 32833 | |||||||||| || || |||||||| | | ||| || ||| || | || || Sbjct 20552 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 20493 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 |||||| ||||||| || || || || || ||| | |||||||| || || || Sbjct 20492 TGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 20433 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||||| | | | | ||| || |||| | | || || || || | | ||| || Sbjct 20432 GTTAAATAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTA 20373 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||| || || |||| || || ||| || ||||| || |||||||| || ||| | Sbjct 20372 CATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGG 20313 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 || ||| || || || ||| || || | || |||||||| || ||||| |||||||| Sbjct 20312 AACCTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGC 20253 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||||||| || || | || ||||| || || ||||| | | | || || ||||| Sbjct 20252 TGCAAAAAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCA 20193 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 | | || || || || | || || ||||| ||||||| || |||||| ||| | Sbjct 20192 GTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTG 20133 Query 33194 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 33244 |||||||| ||||||| ||| |||| || |||||||| || ||||| || Sbjct 20132 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq17 Length=136257712 Score = 293 bits (324), Expect = 3e-74 Identities = 610/900 (68%), Gaps = 30/900 (3%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| | || || || || || | || || || || | ||||| ||| Sbjct 93987394 GACATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCT 93987453 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||| ||| |||||||||||||| || |||||||| || | |||| || |||| Sbjct 93987454 TCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACA 93987513 Query 32475 CCCAATTCA---GAAATCAATCTATCTGCGACAAA-TTCTATATATGTTTTCATCATTTC 32530 |||| || | || | || || || | ||| ||| || || ||||||| Sbjct 93987514 CCCAGCTCCAGTGGAAGC---CTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGT 93987570 Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 |||||| || | || || || || | |||| | || ||||| || || | || Sbjct 93987571 GCAATTCGCCCCGAAGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCT 93987630 Query 32591 GACCGCGTCTGT-TATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGT 32648 || | || || | | || | ||||||||| || || | | | | | | | || Sbjct 93987631 AACAGTGTTGGTGTTTTATTTCTTTTACTGTTTGCTCCAATGGCTTG-TGTACCAGGTGC 93987689 Query 32649 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 32708 || ||||||| || || | || ||||||| |||||||||||| ||||| || || ||| Sbjct 93987690 TTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTG 93987749 Query 32709 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 32768 |||| || || || ||| || | || || || ||||| ||||| || ||||| Sbjct 93987750 GAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAA---- 93987805 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-- 32826 ||| | |||||| || || |||||||| | || || |||||||| || Sbjct 93987806 --------GAAGACTCCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGAC 93987857 Query 32827 -CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT---ACACAAGGCATT 32882 | |||| |||| ||||| || |||||||| || |||||||||||| Sbjct 93987858 TCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATT 93987917 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || | |||||||| |||||||| | | |||| || |||||||| || || ||||| Sbjct 93987918 GTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCAATA 93987977 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | |||| |||||||| || || |||||||| ||||| |||| || || ||||| || Sbjct 93987978 AGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAG 93988037 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | ||||| |||| || |||||| | |||||| || | || |||||||| ||||| Sbjct 93988038 CGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATG 93988097 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || ||||| |||||||| || |||| | || |||||||| | | || || || | Sbjct 93988098 CCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATCCAGTTTC 93988157 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCA-CTTCTTCCACTGTCCAAAATGA 33181 || | ||| | | ||| | || || | |||| |||||| | |||||||| || Sbjct 93988158 AGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGA 93988216 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || || || ||||| | |||||| ||||| |||| ||| ||||| | |||||| Sbjct 93988217 GGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAAA 93988276 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || |||||||| || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 91856955 ACCTGAAATTCCCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGCTCAATG 91856896 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| || |||||||| ||||| ||||| || || | | |||| Sbjct 91856895 GACTCATTATTCCCCAGAATCTGGGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 91856836 Query 62312 CTATTTCTAAGACCGTA 62328 || || || | ||| || Sbjct 91856835 CTGTTCCTTATACCATA 91856819 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || |||||||| || || || || | Sbjct 91840174 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCTATCCTTGCTGCCAGGA 91840115 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | || || | || || ||| | || || ||||| ||||||| Sbjct 91840114 TGGCATAGTCAGGGTGCTTCGTGGTCAAGGTCGCGGCTGTCTCAGCAGCCAGGGTGTCCA 91840055 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| |||||| |||||||| || ||||| Sbjct 91840054 GTTCCACTGTGGTGACCCCACTATATAGGCCTTGGATTACTTTCAT 91840009 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||||| |||| || || || || || | || || ||||||||||| || || || | Sbjct 91853968 GATCCCTCATACGTTTCATAGGGGCCATACTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 91853909 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 || || || ||||||||||| ||||||| |||||||| || ||||| |||| ||| Sbjct 91853908 GCTCCATAGTAAATGGTTTCAAAGATCTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 91853849 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 || || || | | || || || || |||||||| ||||| || ||||| || || || Sbjct 91853848 AAGGGGTATCTCATCAGGATGAAAGCATCTGCTAAACCTTGTACCCCAATTCCAATGGGA 91853789 Query 62603 CTATGTCTCTTATTAGA 62619 | ||| | ||||| || Sbjct 91853788 CGATGGCGTTTATTTGA 91853772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||| || | || | || || ||||| || | |||||||| || ||||| ||| Sbjct 91844438 CTAGACAGCTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCATGAGTGAAC 91844379 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || ||||||||||| ||||| || ||||| || | || ||||| || ||||| Sbjct 91844378 CACTTCTCAGAAAGTAGGTTGTAGGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATC 91844319 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 91844318 CCCACAGAAACCCTCATCAACATATGCTGTGGTCTTTCA 91844280 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 91860047 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 91859988 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || || ||||||||||| || || || || || ||||| || | || |||| Sbjct 91859987 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 91859928 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | | |||| | || || |||| Sbjct 91859927 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 91859877 >seq4 Length=114123490 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 16582949 CCTCGTCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCT 16582890 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || || |||||||| ||||||||||| || ||||||| Sbjct 16582889 TGAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGG 16582830 Query 32803 C 32803 | Sbjct 16582829 C 16582829 >seq7 Length=104786220 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | |||||||||||||| |||||||||||||| || || |||||||| Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 35874049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633589198158400