Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=125065471 Score = 111 bits (122), Expect = 1e-19 Identities = 168/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 62144675 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 62144734 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 62144735 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 62144794 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || ||||||||| |||||| | |||||||| Sbjct 62144795 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 62144854 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT-ATTAT 25235 || || ||||| || || || || | || || | || || || || ||| ||||| Sbjct 62144855 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGCTATTAATTAT 62144912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||| || || ||||||| | || || ||| | | Sbjct 98064818 ATGCAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTAGAGCCCAGT 98064759 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || | ||||||||||| Sbjct 98064758 GACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCCTCCCACCTGACCAG 98064699 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||||||||| |||| |||| | ||| || |||||||| Sbjct 98064698 CAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAAC 98064639 Query 25179 ATTCAAAAAGAATCCAC 25195 || || ||||| ||||| Sbjct 98064638 ATCCAGAAAGAGTCCAC 98064622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433299460476260