Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3385 248 1e-60 seq17 217 2e-51 seq14 185 1e-41 seq4 100 3e-16 >seq3385 Length=62036 Score = 248 bits (274), Expect = 1e-60 Identities = 648/975 (66%), Gaps = 30/975 (3%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||||||||| | || || ||||| || |||| ||| ||| || || | Sbjct 21008 TTAGAAATCTGCATCCAAGGTGAAGACATTATCG-GTGGTTTCCGC--CATGACTGCAAA 20952 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 | | || || || |||| ||| |||||||||||||| || ||||| || || || Sbjct 20951 TCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATG-- 20894 Query 92862 ATTCACTAGTGATT-----GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA 92916 ||| | | | | ||||| | || | | || |||| | ||| | || Sbjct 20893 -TTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTG-AGAATCCAAGTTCTA 20836 Query 92917 CAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTA 92975 || |||||| ||||||||||| || |||||||| | ||||| || | || ||||| | Sbjct 20835 TAAGTAATCTGTCAGCTACAAACTCAATGTACTGTTTCGTCAAAACATAGTTAATTCCAA 20776 Query 92976 GAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 || | ||||| | || || || || || || | ||| ||| ||| || || | Sbjct 20775 TGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAGCATCAGCAA 20716 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||||| | ||||| | || || || | || || |||| | ||| | Sbjct 20715 TGATTTCCCTCACTCTGTCTTCTGAAGGCTTGT-----ACTGAA----ACATCAGGCAGG 20665 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||| || | |||||| || | || | |||| ||||| || || | | Sbjct 20664 CAAAGTCACAGTGAAGACCTTCATCCC-TGCTGATCAGTTCATTTGAAAAAGTCAGTTCA 20606 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | || |||| ||||| ||||| ||||||| |||||| ||||| || | || Sbjct 20605 GGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAAATT 20546 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGAT 93273 |||||||| || ||||| ||||| | | ||| ||||| | | || ||||| || Sbjct 20545 CCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCT-AT 20487 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | |||||| || ||||||||||||| | | || | |||||| || |||||||| Sbjct 20486 CCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTAAA 20427 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | | | | ||||| ||||| || || |||| | | ||||| || Sbjct 20426 TAAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTC 20367 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 || || |||||||| || ||| || || || ||||| || || |||| | ||| Sbjct 20366 TGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAACCTG 20307 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||| || ||| ||| | ||| || | |||||||| || || ||||| |||||||| Sbjct 20306 CACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAA 20247 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGA 93573 ||| || || || || ||||| | ||||| || ||||||||| | ||| | | Sbjct 20246 AAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTTCCAGTGAGG 20187 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 || || ||||| | || || ||||| | ||||| || ||||| ||||| || || Sbjct 20186 GAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTGCTTATA 20127 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTT- 93692 ||| ||| || || |||| || |||||||| |||||||| | || ||| |||| Sbjct 20126 CATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACC--TTCGGGAACTCTTT 20069 Query 93693 -TTAGTAACGGCTCT 93706 |||| | ||||||| Sbjct 20068 CTTAGGAGCGGCTCT 20054 >seq17 Length=136257712 Score = 217 bits (240), Expect = 2e-51 Identities = 443/653 (68%), Gaps = 25/653 (4%) Strand=Plus/Plus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 ||| || ||||| | | ||| |||| | || ||| |||| |||||||| ||||| Sbjct 93987671 TGGCTTGTGTACCAGGTGCTTGAACATCAGCCAGGCAGAGTCCCAGTGTAAACCCTCGTC 93987730 Query 93121 TCGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 || || || | ||||||||| | ||| | || | ||||| || |||||||||| Sbjct 93987731 TC-TGCTAATAAACTCATTGGAAAGTGTAAGGCCCAACATCAGTCTGCGATTCTTGAGCC 93987789 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || ||||| || | |||||||| || ||||| ||||||| Sbjct 93987790 AGAATATCGATGCAAAG------------AAGACTCCTTCCACCGCAGCAAAGGCCACAA 93987837 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCGGCTT 93296 | ||| || | || ||| | || | |||| || ||||| || || | Sbjct 93987838 CTCATTCTCCATA---TGAGGACTCTTTGTCCCCAGTCCAACGCAAGGCCCAGTCAGCCT 93987894 Query 93297 TTTTCTTAAT---ACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCG 93353 | ||||| | |||||| | ||||| ||||| || || || || |||| || | | Sbjct 93987895 TCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGG 93987954 Query 93354 AATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTG 93413 |||| ||||| || || || | || ||||||||||| || | || ||||| | Sbjct 93987955 GATCTTTAATGTACGTGTCAATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGG 93988014 Query 93414 CAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCT 93473 || ||||||| || |||||||| | || || || | || |||||||| ||||| || Sbjct 93988015 CAGTTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCT 93988074 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTA 93533 | || | |||||||||||||| ||||| |||||||| ||||||| || || || Sbjct 93988075 CCACCAAGTTTTCATTGACTATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTA 93988134 Query 93534 TAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 |||||||| ||||||| ||| || ||||| | | | | || ||||| || | Sbjct 93988135 TAAAATGTCTCTCATCCAGTTTCAGAGCTTCCCAGTGTTGAATACCCTTGGAAAGGTCCA 93988194 Query 93594 -CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||| | |||||||||| || || || ||||| |||||||| | ||| || || || Sbjct 93988195 CCTTCTT-GGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCCAGATATCATGG 93988253 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 |||| ||| ||||| | ||||| || || || ||| | |||| ||||| Sbjct 93988254 TATTCAATGGGAAAGACAACAAAGCGGCAGGGATTTTCTCTCAGTAGTGGCTC 93988306 >seq14 Length=152946536 Score = 185 bits (204), Expect = 1e-41 Identities = 500/749 (67%), Gaps = 27/749 (4%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CG 92982 ||||| || |||||||| |||||||| ||||||| || ||||| || || || | Sbjct 69609864 CTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCAT--CTCGATGAGCA 69609921 Query 92983 T-ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTAC-AACGGCTTCTTTCAAGATT 93040 | ||||| | || || | | || | | ||| || | ||| | | | | ||| Sbjct 69609922 TCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAACCTCGTTGGTGATTATT 69609981 Query 93041 TCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 ||| ||||||| || | | ||| || ||||| | | ||| |||| | | | ||||| Sbjct 69609982 TCTTTTACTCTGCT--TCGATGGCTTGTGTACCAGGTGCTTGAACATCAGGTAGACAAAG 69610039 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAA 93159 || |||||||| | ||||| || || || ||||||| ||||| || || | Sbjct 69610040 TCCCAGTGTAAACCCTAGTCTC-TGCTAATAAGCTCATTGGAAAATGTAGGGCCCGGCAT 69610098 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa-aaTATACCTT 93218 ||| || ||||||||||||| ||||| || |||||| |||||||||| || || ||| Sbjct 69610099 CAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTGCTT 69610158 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || | ||||| ||||||| ||||| ||| | | | || | |||| | Sbjct 69610159 CTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTCCCCAGTCCAAT 69610218 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 || ||||| || || |||| | ||| | |||||| ||||| || || || | Sbjct 69610219 GCAAGGCCCAGTCAGC---CTTCTCA----CAGGCATTGTTTCAATAGCATTGAAAAGAT 69610271 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | |||| || | | |||| ||||| | || || | ||| ||||||| ||| | Sbjct 69610272 ATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTACATTTTAGAGT 69610331 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | | ||| | || ||| ||| || || ||||||| ||| || || | || |||| Sbjct 69610332 GTATCCTTTCCCTGCCAGTTTAGAAGCCATA-AAACATCCAGCCTCTGTAACTTGAACTT 69610390 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 |||| ||||| ||| || | ||| | |||| ||| ||||| |||||||| |||| Sbjct 69610391 CTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGCAAAGAAAG 69610450 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGA 93577 ||| | ||| |||||||| | | |||| | |||| ||||| | | ||| Sbjct 69610451 CCAGAACATGAGCTATAAAATTTCTGTCAT----TCAGAGCT--TCCCAGTGCTGAT--C 69610502 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 || || ||||| || || || || |||||||||| | || || ||||| |||||||| Sbjct 69610503 TCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCTTTCTTGTACATC 69610562 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAA 93666 | ||| || || || || | || ||||| Sbjct 69610563 TGCCAGATATCATGGTACTAGATGGGAAA 69610591 >seq4 Length=114123490 Score = 100 bits (110), Expect = 3e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAA-CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||||| || || || ||||||| ||||| | || || | ||| || |||||||| Sbjct 16582947 TCGTCTC-TGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGCCCCCGTTTCTT 16582889 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 |||||| |||||||| |||||| ||| ||||| || || ||||| ||||| ||||| || Sbjct 16582888 GAGCCAGAATATTGATGCAAAAGAACCGGAAAAGAAGATTCCTTCTACGGCGGCAAAGGC 16582829 Query 93235 CACAATACGTTC 93246 ||||| ||||| Sbjct 16582828 CACAACGCGTTC 16582817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823184052960