Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq15 125 6e-24 seq3 116 3e-21 seq10 102 7e-17 seq17 89.7 4e-13 seq18 86.0 5e-12 >seq15 Length=152823684 Score = 125 bits (138), Expect = 6e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| ||||| ||||| || |||| || || || || ||| Sbjct 125085172 GATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 125085113 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || || ||||||||||| || || || || || Sbjct 125085112 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 125085053 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| ||||| ||| | || ||| ||||||| | || |||||||| Sbjct 125085052 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTACAA 125084993 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| |||||| Sbjct 125084992 CATCCAGAAAGAGTCCACC 125084974 >seq3 Length=125065471 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22210 TTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTG 22269 |||| || ||||| || || || || || | | || || || |||||||||| || Sbjct 98064827 TTTGCCAACATGCAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTA 98064768 Query 22270 GAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCA 22329 || ||| || ||| | || || | || || || |||||||||||||| | ||| Sbjct 98064767 GAGCCCAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCCTCCCA 98064708 Query 22330 CCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCC 22389 || || || || | || ||||| |||||||||||| |||||||| || |||| | || Sbjct 98064707 CCTGACCAGCAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCT 98064648 Query 22390 GATTACAACATTCAAAAAGAATCCACC 22416 ||||||||||| || ||||| |||||| Sbjct 98064647 GATTACAACATCCAGAAAGAGTCCACC 98064621 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 62144441 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 62144500 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || || ||||| || || || Sbjct 62144501 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCT 62144560 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| |||| ||| ||||||| |||| ||| Sbjct 62144561 GACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGAT 62144620 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 62144621 TACAACATCCAGAAAGAGTCGACC 62144644 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 62144675 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 62144734 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || || ||||| || || || || || Sbjct 62144735 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 62144794 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| |||| ||| |||||| |||| ||||||||| Sbjct 62144795 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 62144854 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 62144855 ATCCAGAAAGAGTCGACC 62144872 >seq10 Length=90668104 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || ||| || ||| | || || |||| Sbjct 33660652 ACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAGGCC 33660593 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || || || || || | || ||||| | |||||| Sbjct 33660592 AAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATATTCTCGGGCAAA 33660533 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||||||| | ||||| |||||||| || ||||| |||||| Sbjct 33660532 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACC 33660479 >seq17 Length=136257712 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || | ||| || || | || || ||||| |||| || || || ||| || | Sbjct 39746309 GATGCAGATCTCTGTGAAGACCCTTACGGGGAAAACCATCACGCTAGAGGTTGAACCCTC 39746368 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || || || || ||||| || ||||| || ||||| Sbjct 39746369 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 39746428 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| || || ||| | || ||| ||| || | || || ||||| Sbjct 39746429 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAA 39746488 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || || ||| | ||| | || ||| || | || || ||| Sbjct 39746489 CATTCAAAAGGAGTCTACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 39746537 >seq18 Length=130317789 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22250 AAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTC 22309 |||| |||| ||||| || ||| || | || || | || || | || || || | Sbjct 111279854 AAACCATCACGCTTGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAGATCC 111279795 Query 22310 AAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAG 22369 | || ||||| || ||||| || ||||| || | || | ||||| || || ||| | | Sbjct 111279794 AGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGG 111279735 Query 22370 AGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTT 22429 | ||| ||| || | || || |||||||||||||| || |||||| | ||||| || | Sbjct 111279734 AAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTGT 111279675 Query 22430 TGCGATTGCGCGGAGGT 22446 || || | || || ||| Sbjct 111279674 TGAGACTTCGGGGTGGT 111279658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419700356189260