Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq5 91.5 3e-13 seq13 89.7 1e-12 seq9 89.7 1e-12 seq3 89.7 1e-12 seq20 84.2 4e-11 >seq1 Length=198846266 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 176027554 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 176027613 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 176027614 TCCCGGCAGAGA 176027625 >seq5 Length=117181667 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 19361393 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 19361452 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| |||| Sbjct 19361453 CCCACGTTGGGCGCAAGT 19361470 >seq13 Length=160222558 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 94308239 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 94308298 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 94308299 CCCACGTTGGGC 94308310 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 94405548 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 94405489 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 94405488 CCCACGTTGGGC 94405477 >seq9 Length=94415995 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 20188924 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20188983 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 20188984 CCCACGTTGGGC 20188995 >seq3 Length=125065471 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 47280523 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 47280464 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 47280463 CCCACGTTGGGC 47280452 >seq20 Length=148322235 Score = 84.2 bits (92), Expect = 4e-11 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATC-TAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||| Sbjct 115118268 GCCCAGCTAGCTCAGTTGGTAGAGCGTGGGACTCTTAATCCTAG-GGTCGTGGGTTCGAG 115118210 Query 142563 CCCCACATCGGGCAG 142577 |||||| | |||||| Sbjct 115118209 CCCCACGTTGGGCAG 115118195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027765633864764