Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq17 109 5e-19 seq12 95.1 1e-14 seq8 93.3 4e-14 seq15 89.7 4e-13 seq18 87.8 2e-12 seq6 82.4 6e-11 seq5 82.4 6e-11 seq3 82.4 6e-11 >seq17 Length=136257712 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || | ||| | ||||| || |||||||||||||| || Sbjct 39746537 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 39746478 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || |||||| || || |||||||| |||| || | ||| || || ||||| Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 39746417 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 39746358 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || || || ||| | |||||||| Sbjct 39746357 CTCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq12 Length=182815943 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 146741556 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTC--- 146741612 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || ||||| | | |||||||| |||| || | ||| || || ||||| Sbjct 146741613 -AAAGTCCGGCCATCTTTCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 146741671 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||| |||| | ||| | ||||| || ||| || Sbjct 146741672 AATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAAC 146741731 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | ||||| || || || || || |||||||||||||| Sbjct 146741732 CTCCAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 146741779 >seq8 Length=97876770 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | || ||||| || | ||| | || || || |||||||||||||| || Sbjct 13844538 ACCACCAAGAAGGCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAA 13844479 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| || || |||||||| ||| || | ||| || || ||||| Sbjct 13844478 CA-AGTATGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 13844420 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | |||||| || ||| || Sbjct 13844419 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAAC 13844360 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || | || || || |||||||||||||| Sbjct 13844359 CTCGAGCGTGATGGTCTTCCCCATAAGGGTCTTCACAAAAATCTGCAT 13844312 >seq15 Length=152823684 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| || || || |||||| || || || || Sbjct 125084975 GTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 125085034 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| || ||||| |||||| || Sbjct 125085035 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 125085094 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || || || || | ||| Sbjct 125085095 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTT 125085154 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 125085155 TTCACAAAGATCTGCAT 125085171 >seq18 Length=130317789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || ||||| | || || || |||||||||||||| || Sbjct 111279658 ACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 111279717 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| || |||||| || || |||||||| ||| || | ||| || || ||||| Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 111279778 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 111279837 Query 114335 GTC 114337 || Sbjct 111279838 CTC 111279840 >seq6 Length=117542938 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || | ||| | || || || |||||||||||||| || Sbjct 35538739 ACCACCTCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 35538798 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || |||||||| |||| || | ||| || || ||||| Sbjct 35538799 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 35538858 Query 114275 AATGCCTTCTTTGTC 114289 || |||| || || Sbjct 35538859 AAGTTCTTCCTTATC 35538873 >seq5 Length=117181667 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || |||||||| || | ||| | || || || ||||||||||||| || Sbjct 9091594 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTC--- 9091650 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| || |||||| || || |||||||| ||| || | ||| || | ||||| Sbjct 9091651 -AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAGG 9091709 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| || || |||| |||| | ||| ||||| || ||| || Sbjct 9091710 AAGTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTGTAGTGTCCCAGGGTTCAAC 9091769 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || || ||||| || || || || || |||||||||||||| Sbjct 9091770 CTCGAGCGTGACAGTTTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 9091817 >seq3 Length=125065471 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 62144871 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 62144812 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| ||||| || ||||| || Sbjct 62144811 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 62144752 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 62144751 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 62144692 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 62144691 TTCACGAAGATCTGCATG 62144674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420106729423248