Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3385 134 3e-26 >seq3385 Length=62036 Score = 134 bits (148), Expect = 3e-26 Identities = 304/452 (67%), Gaps = 14/452 (3%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| | ||||| || || ||| ||| || || || ||||| ||| ||| | | Sbjct 20233 ACATCTTAGCCTTTTTTGCAGCCAGTGATGGAATTGTAAATGAAAACTTGGTGGAGCGTT 20292 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 | | | ||||||||| ||| | | ||||||||| ||||| ||||| ||| | Sbjct 20293 TTAGTCAGGAGGTGCAGGTTCCGGAGACTCACTGCTTCTATGGCTTTCAGATTCTCATCG 20352 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 |||| || ||||| ||| ||||| ||| | |||| |||||| ||||| Sbjct 20353 AGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAGATCC----- 20407 Query 42598 AGCGTAACGGGC-----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | || ||| | || || || || || || ||||| | | ||||| || || Sbjct 20408 AAAGAAAAGGGAATTTTTATTTAACGCAATTGAAACAATGCCATATGTTAAGAAAAAAGC 20467 Query 42653 GGACTGGGCGCTCAACTGGATCG-AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 ||||||||| || |||||| | ||| | | | || || || || || |||| | Sbjct 20468 GGACTGGGCTCTGCGCTGGATAGCAGA-TAGGAAATCTACTTTTGGGGAAAGAGTGGTGG 20526 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| | || || || || || | |||||| || | || || | || |||||||| | Sbjct 20527 CCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGATCATTTGCTGCAATATTCTGGCTAA 20586 Query 42772 AGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || ||| ||| || ||||| | ||| || || || || ||||| ||||||||||| || Sbjct 20587 AGAAGAGAGGCCTC-ATGCCTGAACTGACTTTTTCAAATGAACTGATCAGCAGGGATGAA 20645 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 || || || | |||||||||||||| |||| Sbjct 20646 GGTCTTCACTGTGACTTTGCCTGCCTGATGTT 20677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944275409887040