Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq18 224 9e-54 seq15 100 3e-16 seq2 82.4 7e-11 >seq18 Length=130317789 Score = 224 bits (248), Expect = 9e-54 Identities = 479/713 (67%), Gaps = 12/713 (2%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||||||||| | ||| || || ||||||||||| ||||| | ||| || || Sbjct 85151531 AGCGGCTCTATATGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCT 85151472 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || ||||| || | ||| |||| ||| || || | || | ||||||||||||||| Sbjct 85151471 GGCTGCAGACCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTG 85151412 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 ||||| || |||| |||||| ||||| |||||||| || || || || || ||||| || Sbjct 85151411 AAAGGCACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCA 85151352 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | ||||| || ||||| | || || || || || ||||||| | | || Sbjct 85151351 TTCACCACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCT 85151292 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 |||||||| |||||||| ||||||||||| || | || || |||| || || Sbjct 85151291 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 85151232 Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530 | || | || ||||| | || || || | || || | |||| || |||| Sbjct 85151231 ATCATTTTTTGCAGCTGGTCTACTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTAC 85151172 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590 | || ||||| |||||||| |||||||| ||||| || |||| ||| || ||||| Sbjct 85151171 TCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCC----CCTTTCTG 85151116 Query 20591 TGCGCCAG----GCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 | | ||| || | | |||| || || | ||| ||||| ||||| || | Sbjct 85151115 TCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCT 85151056 Query 20647 GACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTC 20706 ||||| | || | || | | | || ||||| | |||||| | || ||| Sbjct 85151055 CACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTC 85150996 Query 20707 TTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAG 20766 | || || || ||| ||||| || || || || || | ||||| | || | ||| Sbjct 85150995 CTCCAAAACACCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAG 85150936 Query 20767 ACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTCGAGTCG 20826 || || | ||||||||||| || | || ||||||||| ||||||||||||| || Sbjct 85150935 GCTGTATCGTGCCTGCATGCCGAACACCGACAGGGTGCCTGTGCCGGTGCGGTC--CTCC 85150878 Query 20827 ATC--GCTGCCACGGCACAAAATTTCCCTCAACTGCCTGAGATACTGAAGTTC 20877 || | ||| | | |||||| | | || |||||| || ||||| ||||| Sbjct 85150877 TTCTTGAAGCCGCAGTGCAAAATGTGCTCCACCTGCCTCAGGTACTGGAGTTC 85150825 >seq15 Length=152823684 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || | ||| |||| ||| || || | || | ||||||||||||||| ||||| Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||| ||||| |||||||| || ||||| || || ||||| || | | Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 ||||| || ||||| | || || || || || ||||||| Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCA 27100267 >seq2 Length=131945496 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 20684 CCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTT 20743 ||||| | |||||| | || ||| | || || || ||| ||||| || || || || Sbjct 87052921 CCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTGTG 87052862 Query 20744 AGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTG 20803 || | ||||| | || | ||| || || | ||||||||||| || | || |||||| Sbjct 87052861 AGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAACACCGACAGGGTG 87052802 Query 20804 CCTATGCCGGTGCGGTCGAGTCGATC--GCTGCCACGGCACAAAATTTCCCTCAACTGCC 20861 ||| ||||||||||||| || || | ||| | | |||||| | | || ||||| Sbjct 87052801 CCTGTGCCGGTGCGGTC--CTCCTTCTTGAAGCCGCAGTGCAAAATGTGCTCCACCTGCC 87052744 Query 20862 TGAGATACTGAAGTTC 20877 | || ||||| ||||| Sbjct 87052743 TCAGGTACTGGAGTTC 87052728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441342985267360