Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 136 9e-27 seq16 123 6e-23 seq17 116 9e-21 seq20 104 6e-17 seq8 102 2e-16 seq18 91.5 3e-13 seq12 91.5 3e-13 seq14 84.2 5e-11 >seq3 Length=125065471 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||||| || || || || ||| Sbjct 62144637 TCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAG 62144578 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || |||||||| Sbjct 62144577 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 62144518 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 62144517 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 62144458 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 62144457 AAGATCTGCATTTTG 62144443 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| ||||| || ||||||| || || || || ||| Sbjct 62144865 TCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAG 62144806 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || ||||| || Sbjct 62144805 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTC 62144746 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| ||| Sbjct 62144745 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 62144686 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62144685 AAGATCTGCAT 62144675 >seq16 Length=150978388 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 288290 GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC 288349 |||| || || || | ||| ||||| || ||||||| || || || || |||||||| | Sbjct 58879368 GGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCC 58879427 Query 288350 GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAG 288409 ||| || || || || || |||||||||||||| || || |||||||| ||||| | Sbjct 58879428 TCTGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGG 58879487 Query 288410 AATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCT 288469 || || | || || || || ||||| ||||| |||||||| ||||| | || |||| Sbjct 58879488 TGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCT 58879547 Query 288470 GCATTATG 288477 ||||| || Sbjct 58879548 GCATTTTG 58879555 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 3200026 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 3200085 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | || || || || |||| ||| | ||| ||| | || Sbjct 3200086 AAAGTCCGTCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGA 3200145 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | || ||||||||||| || || || || ||||||||||| || | ||| || Sbjct 3200146 AGTC-----TTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCTGAGGGTTCAACC 3200200 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || ||||| || || ||||| || || |||||||| Sbjct 3200201 TGGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 3200247 >seq17 Length=136257712 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| || || ||||| | Sbjct 39746536 CCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 39746477 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 39746476 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 39746417 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 39746416 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 39746357 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| || ||||| || || ||||| || | |||||||| Sbjct 39746356 TCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq20 Length=148322235 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | ||| || ||||| ||| Sbjct 135500364 TCTTTCTGGATGTTGTAATCAGAGAAGGTGCGGCCATCTTCCAGTTGCTTGCCTGCAAAG 135500423 Query 288343 ATCAGACGCTGTTGAGAATCTGGG--ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || | ||| || || ||| || || |||||||||||||| || || ||||| | Sbjct 135500424 ATGAGCCTCTGCTGG---TCGGGGTGATGCCCTCTTTATCCTGGATCTTGGCCTTCACAT 135500480 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || | || | || || ||||| ||||| || ||||| ||||| Sbjct 135500481 TCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCT 135500540 Query 288461 CGAATATCTGCATTATG 288477 |||| || |||||| || Sbjct 135500541 CGAAGATTTGCATTTTG 135500557 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | ||| || | || |||||| || | || ||| Sbjct 62281907 TCTTTCTGGATGTTGTAATCAGGGAGAGTATGGCCACCTTCTAGCTGCTCGTTAGCAAAG 62281848 Query 288343 ATCAGACGCTGTTGAGAATCTGGG-ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| || | ||| || || |||||||||||||| || || ||||| || Sbjct 62281847 ATCAGCCTCTGCTGGTCAGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATT 62281788 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 | |||| || || | || || || || ||||| ||||| | | ||| ||||| || Sbjct 62281787 CTTGATAGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTACTGTTCATGGTCTTCAC 62281728 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 62281727 GAAGATCTGCATTTTG 62281712 >seq8 Length=97876770 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || || | || ||||||| ||| || ||||| || || ||||| Sbjct 13844537 CCACCAAGAAGGCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAAC 13844478 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| | || || || || |||| ||| | ||| ||| | || Sbjct 13844477 AA-GTATGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGA 13844419 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | || | ||| || Sbjct 13844418 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACC 13844359 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||||||||| |||||||| | || ||||| || || |||||||| ||| Sbjct 13844358 TCGAGCGTGATGGTCTTCCCCATAAGGGTCTTCACAAAAATCTGCATCATG 13844308 >seq18 Length=130317789 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || | ||||| ||| || ||||| || || ||||| | Sbjct 111279659 CCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 111279718 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||| ||| | ||| ||| | || Sbjct 111279719 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGA 111279778 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 111279779 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 111279838 Query 288427 TCGAGCGTGATCGTCTTCCC 288446 || |||||||| || ||||| Sbjct 111279839 TCAAGCGTGATGGT-TTCCC 111279857 >seq12 Length=182815943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || || || | ||| |||| || ||||||| || |||||||| ||||| || Sbjct 121887487 TGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCTAGCTGCTTTCCTGCAAAGATGAGC 121887428 Query 288349 CGCTGTTGAGAATCTGGGATTCC----TTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 | || || | || || || ||||||||||||||| || || |||||||| || Sbjct 121887427 CTTTGCTGGTCAGGGGGAATGCCCTCTTTCTTTATCCTGGATCTT-GCCTTCACGTTCTC 121887369 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || | || || || || ||||| ||||| |||||| ||||| |||| Sbjct 121887368 GATGGTGTCACTGGGCTCCACATCTAGGGTGATGGTCTTGTTGGTCAGGGTCTTCTCGAA 121887309 Query 288465 TATCTGCATTATG 288477 || |||||| || Sbjct 121887308 GATTTGCATTTTG 121887296 >seq14 Length=152946536 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288269 GATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATT 288328 || ||| ||| ||| |||| || || ||||| | | || || || ||||| | Sbjct 131977007 GAAGAAGGGTGGATTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCG 131977066 Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388 | || || || ||| ||| | ||| ||| | || | |||||| ||||||||| | | Sbjct 131977067 GCTTACCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCT 131977126 Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448 | || || || ||| |||||| || | ||| || ||||||||||| | |||||| Sbjct 131977127 TGGCCTTTACATTTACTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGCCTTCCCCA 131977186 Query 288449 TCAGAGTCTTGACGAATATCTGCATTATG 288477 | || ||||| || || |||||||| ||| Sbjct 131977187 TAAGGGTCTTCACAAAAATCTGCATCATG 131977215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179572722203912