Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3 136 4e-27 seq20 127 2e-24 seq15 118 1e-21 seq16 113 5e-20 seq12 104 2e-17 seq17 102 8e-17 seq18 93.3 4e-14 seq6 89.7 5e-13 seq8 82.4 8e-11 >seq3 Length=125065471 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | || |||||| | ||||| ||||||||||| Sbjct 62144643 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCC 62144584 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || || ||| Sbjct 62144583 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 62144524 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 62144523 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 62144464 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 62144463 TTCACGAAGATCTGCATTTT 62144444 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | || ||||| | ||||| |||||||||||| Sbjct 62144871 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCG 62144812 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || ||||| || || || || ||| Sbjct 62144811 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 62144752 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 62144751 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 62144692 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 62144691 TTCACGAAGATCTGCAT 62144675 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || ||||| || ||||||||||| | | |||| | | || Sbjct 98064607 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATCC 98064666 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| |||||||| | || |||| ||||||||| || || | || || || ||| Sbjct 98064667 TCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTCT 98064726 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| ||| | || |||| || || || || | ||| | |||| Sbjct 98064727 TGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGTC 98064786 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| ||| || || ||||| || ||||| || Sbjct 98064787 TTGCCCATCAGGGTCTTCACGAAGATCTGCATGTT 98064821 >seq20 Length=148322235 Score = 127 bits (140), Expect = 2e-24 Identities = 149/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||| | ||||| || ||||||||||| | || |||||| | ||||| || |||||||| Sbjct 135500358 GTCAACTCTTTCTGGATGTTGTAATCAGAGAAGGTGCGGCCATCTTCCAGTTGCTTGCCT 135500417 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| | || || ||||| || || || || ||| Sbjct 135500418 GCAAAGATGAGCCTCTGCTGGTCGGG-GTGATGCCCTCTTTATCCTGGATCTTGGCCTTC 135500476 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||| |||| || | ||||||||| |||| || Sbjct 135500477 ACATTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 135500536 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||| ||||||||||| Sbjct 135500537 TTCTCGAAGATTTGCATTTT 135500556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | || || | | |||| ||||||| | Sbjct 62281913 GTTGACTCTTTCTGGATGTTGTAATCAGGGAGAGTATGGCCACCTTCTAGCTGCTCGTTA 62281854 Query 64307 GCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || |||| ||||||||| ||| || || || ||||| || || || || ||| Sbjct 62281853 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTT 62281794 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || |||| || ||||| |||| || | |||||| | | ||| || Sbjct 62281793 CACATTCTTGATAGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTACTGTTCATGGT 62281734 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 62281733 CTTCACGAAGATCTGCATTTT 62281713 >seq15 Length=152823684 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || ||||||||||||| | |||||| | || Sbjct 125084959 AAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATC 125085018 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | || |||| ||||||||| || || || || || || || Sbjct 125085019 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 125085078 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| ||| | || |||| || || || || | || | ||| Sbjct 125085079 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 125085138 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || ||||| || || || ||||| Sbjct 125085139 CTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq16 Length=150978388 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 64262 ATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGC 64321 ||||||||||| | || ||||| | ||||| ||||||||||| ||| | || |||| | Sbjct 58879370 ATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTC 58879429 Query 64322 TGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTA 64381 ||||||| || ||||| || ||||| || || || || ||| || ||| | || Sbjct 58879430 TGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTG 58879489 Query 64382 TCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 |||| || ||||| |||| || | |||||||||||||| || || | || || ||| Sbjct 58879490 TCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGC 58879549 Query 64442 ATTTT 64446 ||||| Sbjct 58879550 ATTTT 58879554 >seq12 Length=182815943 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 || ||||||||||| | || ||||| | ||||| |||||||| || ||| | |||||| Sbjct 121887487 TGGATGTTGTAATCAGAGAGGGTGCAGCCATCTTCTAGCTGCTTTCCTGCAAAGATGAGC 121887428 Query 64319 CGCTGCTGGTCGGGAGGAAT----TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTC 64374 | |||||||| || ||||| || |||||| || || | | || ||| || ||| Sbjct 121887427 CTTTGCTGGTCAGGGGGAATGCCCTCTTTCTTTATCCTGGA-TCTTGCCTTCACGTTCTC 121887369 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || |||| || ||||| |||| || | ||||||| ||||| || || |||| Sbjct 121887368 GATGGTGTCACTGGGCTCCACATCTAGGGTGATGGTCTTGTTGGTCAGGGTCTTCTCGAA 121887309 Query 64435 AATTTGCATTTT 64446 ||||||||||| Sbjct 121887308 GATTTGCATTTT 121887297 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| || |||| || || || |||||||||||||| || Sbjct 92361984 ACCACCACGAAGTCTCAACACGAGTTGAAGGGTAGACTCCTTTTGAATGTTGTAGTC--- 92361928 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| ||||||||||| ||| | || | || |||||| || ||||| Sbjct 92361927 -AAAGTATGGCCATCTTCCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGG 92361869 Query 64336 AATTCC-TTCTTTTTCTTGTATTTTTTGCTTTACA 64369 |||||| ||||| ||| || || || ||||||| Sbjct 92361868 AATTCCTTTCTTATTC-TGGATCTTGGCCTTTACA 92361835 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || Sbjct 146741556 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTC--- 146741612 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||| | |||| || ||| | || |||| |||||| || ||||| Sbjct 146741613 -AAAGTCCGGCCATCTTTCGGAGGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 146741671 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || | || ||||||| || | || || | || || || Sbjct 146741672 AATTCCTTCCTTATCCTGGGTCTTGACCTTTACATTTTCTATAGTGTCCCAGGGTTCAAC 146741731 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || || | || || || ||||| ||||| Sbjct 146741732 CTCCAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 146741779 >seq17 Length=136257712 Score = 102 bits (112), Expect = 8e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 39746537 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGA 39746478 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || |||| |||||| || ||||| Sbjct 39746477 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39746418 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||||| || || || || || ||||||| Sbjct 39746417 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 39746384 >seq18 Length=130317789 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| | ||||| || || || |||||||||||||| || | Sbjct 111279658 ACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 111279717 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | | |||| |||||| || ||||| Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||||| || || || || || ||||||| Sbjct 111279778 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 111279811 >seq6 Length=117542938 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 35538739 ACCACCTCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 35538798 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || |||| |||||| || ||||| Sbjct 35538799 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 35538858 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 || | |||| || || || | || ||||||| Sbjct 35538859 AAGTTCTTCCTTATCCTGGGTCTTGGCCTTTACA 35538892 >seq8 Length=97876770 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || || || |||||||||||||| || | | || | ||||| Sbjct 13844520 CACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACAAGTATGGC-CATCTTC 13844462 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| || ||| | | |||| |||||| || |||||||||||||| || || || Sbjct 13844461 CAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 13844402 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||||||| || | || || || || || || | || | |||||| Sbjct 13844401 GATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTGATGGTCTT 13844342 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | || || || ||||| ||||| Sbjct 13844341 CCCCATAAGGGTCTTCACAAAAATCTGCAT 13844312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499611048993760