Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq1874 104 3e-17 >seq1874 Length=4495 Score = 104 bits (114), Expect = 3e-17 Identities = 246/365 (67%), Gaps = 14/365 (4%) Strand=Plus/Plus Query 200751 ACTGGAGGCAGTTGACCAGGGTCACCCAGCACAAGGATAGGAACGCCAAACGACAGCAGG 200810 || |||||||| || | || || || || || |||||||||||| |||||||||||||| Sbjct 3329 ACGGGAGGCAGCTGCGCCGGATCGCCAAGGACGAGGATAGGAACGTCAAACGACAGCAGG 3388 Query 200811 TCGTTACCCTGATCTTCGTTCACCATCGACACCTCATCCACGATCAGTAGGTTGGTGTGC 200870 ||| | || | |||| ||||||||||| || || |||||||| || |||| | | Sbjct 3389 TCGCGAGCCAAACTGTCGTCGACCATCGACACTTCGTCGACGATCAGGAGTTTGGCATCC 3448 Query 200871 CGAAGGATGGATTCAGGGTTTAGCACGTAGTCCACCACGCGCCCCGTCTGCGGGTCGGTC 200930 || | | || |||| | | | | || | || || | | || | | Sbjct 3449 CGCAACGCGCTGTCGCGGTTGATCTTGAACGATGCCTC---TCCGGTTTCCTGG-CAAAC 3504 Query 200931 ACCG-CCTTGTAGATCAGGCTGTGAATGGTGGACGCACCACGACAGCCCTTCTTGATGAG 200989 | || ||||||||||||| || || || ||||| | |||||||| ||| || Sbjct 3505 ATCGACCTTGTAGATCAGCGAATGGATCGTTGACGCGTCGTCGCAGCCCTTTTTGCGCAG 3564 Query 200990 CTCGGACGCGGCCTTGCCGGTGAACGCGGCGAATTGCACGGTGCCACCAATGTCCGCCAC 201049 || ||| |||||||||||||||| ||| | |||| ||| || || | | Sbjct 3565 CTGAAGCGCCGCCTTGCCGGTGAACGTCGCGTACAGCACCGTG---CCCTTGACGG---T 3618 Query 201050 GCGCGCCGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGTACCTGCGTACCCAAACAGGCG 201109 || || |||| |||| |||| ||| ||||||| ||||| || || |||||||| || Sbjct 3619 GCTGGC--CAATTCCTTG-GCCAACGTCGTCTTGCCAGTACCGGCATAGCCAAACAGCCG 3675 Query 201110 GAAGA 201114 | ||| Sbjct 3676 GTAGA 3680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739838020565600