Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq1874 104 3e-17
>seq1874
Length=4495
Score = 104 bits (114), Expect = 3e-17
Identities = 246/365 (67%), Gaps = 14/365 (4%)
Strand=Plus/Plus
Query 200751 ACTGGAGGCAGTTGACCAGGGTCACCCAGCACAAGGATAGGAACGCCAAACGACAGCAGG 200810
|| |||||||| || | || || || || || |||||||||||| ||||||||||||||
Sbjct 3329 ACGGGAGGCAGCTGCGCCGGATCGCCAAGGACGAGGATAGGAACGTCAAACGACAGCAGG 3388
Query 200811 TCGTTACCCTGATCTTCGTTCACCATCGACACCTCATCCACGATCAGTAGGTTGGTGTGC 200870
||| | || | |||| ||||||||||| || || |||||||| || |||| | |
Sbjct 3389 TCGCGAGCCAAACTGTCGTCGACCATCGACACTTCGTCGACGATCAGGAGTTTGGCATCC 3448
Query 200871 CGAAGGATGGATTCAGGGTTTAGCACGTAGTCCACCACGCGCCCCGTCTGCGGGTCGGTC 200930
|| | | || |||| | | | | || | || || | | || | |
Sbjct 3449 CGCAACGCGCTGTCGCGGTTGATCTTGAACGATGCCTC---TCCGGTTTCCTGG-CAAAC 3504
Query 200931 ACCG-CCTTGTAGATCAGGCTGTGAATGGTGGACGCACCACGACAGCCCTTCTTGATGAG 200989
| || ||||||||||||| || || || ||||| | |||||||| ||| ||
Sbjct 3505 ATCGACCTTGTAGATCAGCGAATGGATCGTTGACGCGTCGTCGCAGCCCTTTTTGCGCAG 3564
Query 200990 CTCGGACGCGGCCTTGCCGGTGAACGCGGCGAATTGCACGGTGCCACCAATGTCCGCCAC 201049
|| ||| |||||||||||||||| ||| | |||| ||| || || | |
Sbjct 3565 CTGAAGCGCCGCCTTGCCGGTGAACGTCGCGTACAGCACCGTG---CCCTTGACGG---T 3618
Query 201050 GCGCGCCGCAATCTCTTGCGCCAGCGTGCTCTTGCCGGTACCTGCGTACCCAAACAGGCG 201109
|| || |||| |||| |||| ||| ||||||| ||||| || || |||||||| ||
Sbjct 3619 GCTGGC--CAATTCCTTG-GCCAACGTCGTCTTGCCAGTACCGGCATAGCCAAACAGCCG 3675
Query 201110 GAAGA 201114
| |||
Sbjct 3676 GTAGA 3680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739838020565600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |