Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 9e-16 seq3 96.9 3e-15 seq18 89.7 5e-13 >seq15 Length=152823684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| || ||||| ||| || ||||| || || Sbjct 125084975 GTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 125085034 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 125085035 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 125085094 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | |||||| || | ||| | || || || || | ||| Sbjct 125085095 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTT 125085154 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 125085155 TTCACAAAGATCTGCAT 125085171 >seq3 Length=125065471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || |||||||| || || |||||||| | Sbjct 98064592 CCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGAC 98064651 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | ||| ||||||||||| || ||| | |||| | |||||| || || || Sbjct 98064652 AGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGG 98064711 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 | |||||||||||| ||| || ||| | | |||| |||||| | ||| || Sbjct 98064712 AGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTACC 98064771 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| |||| || || || || ||||||||| Sbjct 98064772 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| |||||||| || || Sbjct 62144643 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCTAGCTGCTTGCCC 62144584 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || |||||||| || ||| ||| || ||| Sbjct 62144583 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 62144524 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 62144523 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 62144464 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 62144463 TTCACGAAGATCTGCAT 62144447 >seq18 Length=130317789 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||||||||| | || ||||| |||||||| ||||| || Sbjct 111279656 GCACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 111279715 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| ||| || | ||||||||| ||| Sbjct 111279716 GACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGA 111279775 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG 127055 || || || ||||| ||| ||| || ||| | | ||| | ||||||| Sbjct 111279776 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCG 111279827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468679920960