Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 seq12 127 3e-24 >seq1 Length=198846266 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| |||||||| | || || || | ||| Sbjct 151554389 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 151554330 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || |||||||| || |||||||| || || |||||| Sbjct 151554329 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 151554270 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 151554269 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 151554210 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| |||||||| || | | | ||| ||| ||||| | | |||| | Sbjct 151554209 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 151554150 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| |||||| ||||| || ||||| || ||| Sbjct 151554149 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCT 151554105 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 ||||||| || | ||||| || ||||| || || || || || ||||| | ||||| | Sbjct 151552839 TGGTTTGGAATAGTTGCTCATCCCCCCACTCAGGATGCTCCTGCTTGAGTATGTCGCACA 151552780 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | |||||||| || | ||||| |||||||| |||||||| | ||| ||||| | ||||| Sbjct 151552779 CTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 151552720 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | |||||| ||||| ||| | || || | | || | || | ||| | Sbjct 151552719 AGACTTCCTGCCCCACAGCAAACTTCAGGTTCTCAGGGATGTGAGGAGGGTAGATCATCT 151552660 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGAT 9970 ||||| || |||||||| ||||||||||||| || || |||| |||| || Sbjct 151552659 CTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAATGACCTAAT 151552606 Score = 118 bits (130), Expect = 2e-21 Identities = 203/293 (69%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || ||||| || || | | ||| || | | ||| Sbjct 151553311 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAACTGAGTGAGTCCATGTTCCAGGAG 151553252 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || |||| | | | |||| | ||| | ||| || Sbjct 151553251 GATGGAGTTGTTGTAGAGAAACTGTTTGAAGCTGTACTCCTGGTCTTCAATGTTGAAGGT 151553192 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| || | || || |||||||| Sbjct 151553191 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGGTTCTG 151553132 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| |||||||| | || | ||||||||| Sbjct 151553131 ATACTGGAACTGCTGGT--TGAAAAGGAGCTCTGGGTCAAACTTGAGTTTGAAGTGGTAA 151553074 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || || || || || | | ||| | || || || || || || || Sbjct 151553073 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATAGTCTCTCCTGT 151553021 Score = 100 bits (110), Expect = 4e-16 Identities = 195/287 (68%), Gaps = 1/287 (0%) Strand=Plus/Minus Query 8890 CAACGG-ACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGA 8948 |||||| ||| ||||||||||| || |||| |||||| | || || || | || Sbjct 151544639 CAACGGGACACCCCTTCACATTTTTGCAGATGACAGACTGAGTTAAAGCAGTGTTGATGA 151544580 Query 8949 TGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGA 9008 | | |||| || | || | |||||||| || |||||||| || || ||||| Sbjct 151544579 TCTTAAAACTCACTACTCCACTCAAGGTGCTCGGCTTCCAGTATTGAGGAGAATAGATGG 151544520 Query 9009 CGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGA 9068 || || | || | ||||||||| || || || | || || | | || || || | Sbjct 151544519 GATTACCCCTAAGTCTTTTCAAGGAGAATGGTGCTTCTAGTTCTACCAAACTTTCCCCAA 151544460 Query 9069 AGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGA 9128 |||| ||| | | ||| ||||| || || | | |||| || ||||| | | |||| Sbjct 151544459 AGATAGCATCTGCACGAGGTTTCTCCACCAGCAGACCAGGATACAGTTCCATGGTGTCGA 151544400 Query 9129 CGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | | |||||||||| |||||| ||||| || |||||||| ||| Sbjct 151544399 TGCCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 151544353 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| ||||| || | ||||| ||||||||| | || ||||| || | || || Sbjct 151550786 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 151550727 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||| ||||| | | ||||| Sbjct 151550726 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 151550667 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 151550666 GGTGGACTGTCAATCAAATATGATCTGGCT 151550637 >seq12 Length=182815943 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || || || || ||||| |||||||||||||||||| | Sbjct 34697585 GCTGTGTTGACAAGGTTGAAGCCCACATCACCACCGAACGTGCTGGGTTTCCAGTACTCT 34697526 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| ||| | | ||| || || | |||||| |||||||||| ||| || Sbjct 34697525 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 34697466 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || || || || ||||||| ||| | || || | | || || | ||||| Sbjct 34697465 ATACTTTCTCCAAAGATGGAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAAC 34697406 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| || || || | |||||||| ||||| ||||||||||| ||| Sbjct 34697405 TCTAAAGCATCGATGTCACCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 34697346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723679112173600