Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq1 167 3e-36
seq12 127 3e-24
>seq1
Length=198846266
Score = 167 bits (184), Expect = 3e-36
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| ||||||||||| || ||||| |||||||| | || || || | |||
Sbjct 151554389 AAGGGACACCCCTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGTATTGATGATC 151554330
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| ||||| || || || || |||||||| || |||||||| || || ||||||
Sbjct 151554329 TTAAAACCCACTTCGCCTCCAAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 151554270
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || || || | ||| |||| || |||
Sbjct 151554269 TTTCCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 151554210
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|| ||| | ||||| |||||||| || | | | ||| ||| ||||| | | |||| |
Sbjct 151554209 ATAGCATCTGGACGAGGTTTTTCCACCAGCAGGGCAGGGTACAGTTCCATGACATCGATG 151554150
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| | |||||||||| |||||| ||||| || ||||| || |||
Sbjct 151554149 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTTTCTCCT 151554105
Score = 143 bits (158), Expect = 4e-29
Identities = 172/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796
||||||| || | ||||| || ||||| || || || || || ||||| | ||||| |
Sbjct 151552839 TGGTTTGGAATAGTTGCTCATCCCCCCACTCAGGATGCTCCTGCTTGAGTATGTCGCACA 151552780
Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856
| |||||||| || | ||||| |||||||| |||||||| | ||| ||||| | |||||
Sbjct 151552779 CTCTGTTGTGCTCCCGAAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 151552720
Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916
| ||||| | |||||| ||||| ||| | || || | | || | || | ||| |
Sbjct 151552719 AGACTTCCTGCCCCACAGCAAACTTCAGGTTCTCAGGGATGTGAGGAGGGTAGATCATCT 151552660
Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTGAT 9970
||||| || |||||||| ||||||||||||| || || |||| |||| ||
Sbjct 151552659 CTACCTGAGTGTCTTTGACTGTGGGGGGATACACCTCTCCACCAATGACCTAAT 151552606
Score = 118 bits (130), Expect = 2e-21
Identities = 203/293 (69%), Gaps = 4/293 (1%)
Strand=Plus/Minus
Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491
||| || ||||||||||| ||||| || ||||| || || | | ||| || | | |||
Sbjct 151553311 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAACTGAGTGAGTCCATGTTCCAGGAG 151553252
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551
|||||| |||||||| | || |||| | | | |||| | ||| | ||| ||
Sbjct 151553251 GATGGAGTTGTTGTAGAGAAACTGTTTGAAGCTGTACTCCTGGTCTTCAATGTTGAAGGT 151553192
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
||||||| ||| | |||||| | ||||| || ||||| || | || || ||||||||
Sbjct 151553191 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGGTTCTG 151553132
Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
||||| || | ||| ||| || | ||| |||||||| | || | |||||||||
Sbjct 151553131 ATACTGGAACTGCTGGT--TGAAAAGGAGCTCTGGGTCAAACTTGAGTTTGAAGTGGTAA 151553074
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
||||| || || || || || | | ||| | || || || || || || ||
Sbjct 151553073 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATAGTCTCTCCTGT 151553021
Score = 100 bits (110), Expect = 4e-16
Identities = 195/287 (68%), Gaps = 1/287 (0%)
Strand=Plus/Minus
Query 8890 CAACGG-ACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGA 8948
|||||| ||| ||||||||||| || |||| |||||| | || || || | ||
Sbjct 151544639 CAACGGGACACCCCTTCACATTTTTGCAGATGACAGACTGAGTTAAAGCAGTGTTGATGA 151544580
Query 8949 TGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGA 9008
| | |||| || | || | |||||||| || |||||||| || || |||||
Sbjct 151544579 TCTTAAAACTCACTACTCCACTCAAGGTGCTCGGCTTCCAGTATTGAGGAGAATAGATGG 151544520
Query 9009 CGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGA 9068
|| || | || | ||||||||| || || || | || || | | || || || |
Sbjct 151544519 GATTACCCCTAAGTCTTTTCAAGGAGAATGGTGCTTCTAGTTCTACCAAACTTTCCCCAA 151544460
Query 9069 AGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGA 9128
|||| ||| | | ||| ||||| || || | | |||| || ||||| | | ||||
Sbjct 151544459 AGATAGCATCTGCACGAGGTTTCTCCACCAGCAGACCAGGATACAGTTCCATGGTGTCGA 151544400
Query 9129 CGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| | | |||||||||| |||||| ||||| || |||||||| |||
Sbjct 151544399 TGCCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 151544353
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||| ||||| || | ||||| ||||||||| | || ||||| || | || ||
Sbjct 151550786 TCACCCTTCACACCCATGGGAGTTGGGCAGTCATCTGCTACGGGAGGAAGGGCCCTGGTG 151550727
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| || || || || ||||||||||| ||||| ||||| | | |||||
Sbjct 151550726 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCATAGTGCACATTGTAAGTA 151550667
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||||||||||| | || ||||||
Sbjct 151550666 GGTGGACTGTCAATCAAATATGATCTGGCT 151550637
>seq12
Length=182815943
Score = 127 bits (140), Expect = 3e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || || | || || || || || || ||||| |||||||||||||||||| |
Sbjct 34697585 GCTGTGTTGACAAGGTTGAAGCCCACATCACCACCGAACGTGCTGGGTTTCCAGTACTCT 34697526
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
||||| |||||| ||| | | ||| || || | |||||| |||||||||| ||| ||
Sbjct 34697525 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 34697466
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
|| || || || ||||||| ||| | || || | | || || | |||||
Sbjct 34697465 ATACTTTCTCCAAAGATGGAGTTGGGCTGGCACTTCTCCAGCAGCAACCCCGGGTAGAAC 34697406
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| | ||| |||| ||| || || || | |||||||| ||||| ||||||||||| |||
Sbjct 34697405 TCTAAAGCATCGATGTCACCGTACAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 34697346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723679112173600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |