Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 132 5e-26 seq10 118 1e-21 seq15 116 4e-21 seq16 105 8e-18 seq17 100 3e-16 seq20 87.8 2e-12 >seq3 Length=125065471 Score = 132 bits (146), Expect = 5e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||| |||||| ||||| || ||| || ||||| ||||| || | Sbjct 98064590 TGCCACCTCGAAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAG 98064649 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||| | | || || ||||| |||||||||||||||| | ||||||||| | | Sbjct 98064650 ACAGGGTGTGGCCATCCTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTG 98064709 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| || | || | Sbjct 98064710 GGAGGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCTA 98064769 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| |||||| |||| || || || ||||| ||||| ||| Sbjct 98064770 CCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATGTTG 98064822 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || || | ||| | ||||| |||| || ||| || ||||| |||| Sbjct 62144909 ATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGT 62144850 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 | || || |||||||| | || || |||||||||||||| || |||| | |||||||| Sbjct 62144849 AATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGT 62144790 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 | | || | || ||| || ||| |||||| ||| | || | | ||||| || | Sbjct 62144789 CAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGG 62144730 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 62144729 GCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 62144675 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||||| |||| || ||| || ||||| ||||| || | Sbjct 62144675 TGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 62144616 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 62144615 AGAGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGG 62144556 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| || ||| |||||| ||| | || | | ||||| || | |||| Sbjct 62144555 GGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 62144496 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 62144495 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 62144443 >seq10 Length=90668104 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| ||||| || ||| || ||||| ||||||||||| || ||||| | Sbjct 33660462 CGCAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 33660521 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| | |||||||| | ||||||||| | || | || |||||| Sbjct 33660522 TCCTCCAGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 33660581 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| || | | ||||| || | || || || | |||||| Sbjct 33660582 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATG 33660641 Query 46559 GTTTTGCCCGTCAGCGTTTT 46578 || ||||||||||| || || Sbjct 33660642 GTCTTGCCCGTCAGGGTCTT 33660661 >seq15 Length=152823684 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| ||||| || || Sbjct 125084945 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAC 125085004 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 125085005 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 125085064 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 125085065 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 125085124 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || | ||||| |||||||| ||||| Sbjct 125085125 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq16 Length=150978388 Score = 105 bits (116), Expect = 8e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 46410 GGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGC 46469 |||| ||||| || || |||||||| | || || ||||||||||| || || |||| | Sbjct 58879368 GGATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCC 58879427 Query 46470 GCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG 46529 |||||||| | || | || ||| || ||| |||||| ||| | || | | | Sbjct 58879428 TCTGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGG 58879487 Query 46530 TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTT 46589 |||| || | ||||| || | |||||||| ||||| ||||| || || | |||||| | Sbjct 58879488 TGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCT 58879547 Query 46590 GCATTTTG 46597 |||||||| Sbjct 58879548 GCATTTTG 58879555 >seq17 Length=136257712 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||||||||| | ||| ||||||||| || |||||||| || | ||| || | || Sbjct 39746522 CAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 39746463 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||||||| || || || |||| | |||||| || | || | | ||||| || Sbjct 39746462 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 39746403 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||||| | ||| || || | ||||||||| Sbjct 39746402 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGT 39746343 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || ||| |||| ||||| Sbjct 39746342 TTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq20 Length=148322235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||| ||||| || || | ||||| | || || Sbjct 135500346 ACCAGGTGCAGGGTCAACTCTTTCTGGATGTTGTAATCAGAGAAGGTGCGGCCATCTTCC 135500405 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || || | | ||||||||||| | | || ||| || ||| | Sbjct 135500406 AGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGG-GGTGATGCCCTCTTTATCCTGG 135500464 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | || || || | |||| || | |||||||| ||| Sbjct 135500465 ATCTTGGCCTTCACATTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTG 135500524 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || || | ||||||||||||||| Sbjct 135500525 CCAGTCAGGGTCTTCTCGAAGATTTGCATTTTG 135500557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200218146080