Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq15 136 9e-27 seq18 116 8e-21 seq17 116 8e-21 seq10 109 1e-18 seq6 105 1e-17 seq8 104 5e-17 seq9 98.7 2e-15 seq14 96.9 8e-15 seq3 95.1 3e-14 seq5 93.3 9e-14 seq16 89.7 1e-12 >seq15 Length=152823684 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| || ||||||||||| || || |||||||| | || || Sbjct 125084950 TCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGT 125085009 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||| || || ||||| Sbjct 125085010 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 125085069 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || ||||| || || ||| |||||| |||||||||||||| ||| || || || Sbjct 125085070 CTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTC 125085126 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || || ||||| || || | ||||| Sbjct 125085127 CAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq18 Length=130317789 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || | ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 111279668 AGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 111279727 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || |||| || | || || || |||||||| ||||| Sbjct 111279728 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 111279787 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || || |||||||| ||| || ||||| || Sbjct 111279788 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGT 111279846 >seq17 Length=136257712 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| || ||||| |||||||| ||||| || | | ||| | Sbjct 39746527 AGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGG 39746468 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| || | || || || |||||||| ||||| Sbjct 39746467 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 39746408 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 39746407 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGT 39746349 >seq10 Length=90668104 Score = 109 bits (120), Expect = 1e-18 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || ||||| |||| || || | ||||| || Sbjct 33660468 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 33660527 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || | ||| || || | || ||||| ||||| |||||||| |||||||| Sbjct 33660528 AGCTGTTTGCCCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 33660587 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| || || ||||| || | ||| Sbjct 33660588 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTC 33660644 Query 195109 TTTCCTGTCA 195118 || || |||| Sbjct 33660645 TTGCCCGTCA 33660654 >seq6 Length=117542938 Score = 105 bits (116), Expect = 1e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 35538749 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 35538808 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| || | || || || ||||||| |||| Sbjct 35538809 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAAGTTCTTCC 35538868 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || || | || ||| || || || || |||||||| Sbjct 35538869 TTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGA 35538909 >seq8 Length=97876770 Score = 104 bits (114), Expect = 5e-17 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || ||||| ||||| ||||| |||||||| |||||||| ||||| || | ||| Sbjct 13844528 AGGCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACA-AGTATGG 13844470 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || |||| || | || || || |||||||| ||||| Sbjct 13844469 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 13844410 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || || || || ||| || || || ||||||||| Sbjct 13844409 TTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCC 13844371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| |||||||| ||||| || | ||| |||||||| |||||| Sbjct 13420517 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAAACA-AGTATGGCCATCTTCCAGCTGC 13420459 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||| || | || || || ||||||| ||||| || || || || || Sbjct 13420458 TTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGATCTTG 13420399 Query 195058 TGCTTGACGTTCTCAATGGTGTCC 195081 ||| || || || ||||||||| Sbjct 13420398 GACTTTACATTTTCTATGGTGTCC 13420375 >seq9 Length=94415995 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 || ||||||||||||||||| ||||| ||||| || |||||||||| | | ||| Sbjct 69451 CTCCCAAAGAAACACGGCAGAGGAGGTCAATCAGCCTTGCGTTTTGCCCGTTTAAGAATG 69392 Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCA-ATGTTTTTTGCA 125642 ||||||||||| |||||| | |||||| ||||||| ||| || ||||| || | Sbjct 69391 GAAAAGAGACATAACTATGTTCAGAAAGTAGCAGAGACTGCTGTGCAGCTGTTTATTTCT 69332 Query 125643 AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAA 125702 || | ||||| || || ||| | || | |||||||| || || || ||||| | Sbjct 69331 GGAGACAAAGTG-AATGTGGCTGGTTTGGTTTTAGCTGGATCAGCTGACTTTAAAACTGA 69273 Query 125703 GCTTCTGGAATCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTT 125750 || |||||||| | || ||||| || | | | | ||||| || Sbjct 69272 ACTAAGTCAATCTGACATGTTTGACCAGAGGTTGCAATCTAAAGTTTT 69225 >seq14 Length=152946536 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/182 (72%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGA---GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 |||||||| |||||||||||| |||||||| ||||||| ||||| || | | ||| Sbjct 128583618 AGTCTCAACACAAGGTGAAGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTC 128583677 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||||||||| || ||| | | | || || || ||||||| || Sbjct 128583678 CGGCCATCTTCCAGCTGCTTACCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAGTTCT 128583737 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || || || | || ||| || || || || |||||||| ||| || || || Sbjct 128583738 TCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 128583797 Query 195100 GT 195101 || Sbjct 128583798 GT 128583799 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGA---GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 |||||||| |||||||||||| ||||| || ||||||| ||||| || | | ||| Sbjct 131976991 AGTCTCAACACAAGGTGAAGAAGGGTGGATTCCCTTTGAATGTTGTAGTCAGACAAAGTC 131977050 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||| ||||||| || ||| | | | || || || ||||||| ||| Sbjct 131977051 CGGCCATCTTCCAGCGGCTTACCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAGTCCT 131977110 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || || || || | || ||| || || | || |||||||| ||| || || || Sbjct 131977111 TCCTTATCCTGGGTCTTGGCCTTTACATTTACTATAGTGTCCGAGGGTTCAACCTCGAGC 131977170 Query 195100 GT 195101 || Sbjct 131977171 GT 131977172 >seq3 Length=125065471 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||||||||| || || |||||||| | || || ||||| || Sbjct 98064610 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATCCTCT 98064669 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || ||||| || || | || ||||| || || | ||| || |||||||| Sbjct 98064670 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTCTTGG 98064729 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| || || ||||| || | ||| Sbjct 98064730 ATCTTGGCCTTTACATTCTCGATGGTGTC---ACTGGGCTCTACCTCAAGAGTGATGGTC 98064786 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||| || || ||||| | ||||| Sbjct 98064787 TTGCCCATCAGGGTCTTCACGAAGATCTGCAT 98064818 >seq5 Length=117181667 Score = 93.3 bits (102), Expect = 9e-14 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| ||||||| ||||| || | ||| | Sbjct 9091604 AGTCTCAACACCAGATGAAGGGTGGACTCCCTTTGAATGTTGTAGTC----AAAGTCCGG 9091659 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || |||| || | || || | ||||||| ||||| Sbjct 9091660 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAGGAAGTCCTTCC 9091719 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || ||| | || || | |||||| | ||| || || || || Sbjct 9091720 TTATCCTGGGTCTTGGCCTTTATATTTTCTGTAGTGTCCCAGGGTTCAACCTCGAGCGTG 9091779 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| | || || || || | |||||| Sbjct 9091780 ACAGTTTTCCCTGTAAGGGTCTTCACAAAAATCTGCATT 9091818 >seq16 Length=150978388 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 3200035 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGT 3200094 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAA 195034 |||||||| ||||||||||| || |||| || | || || || ||||||| Sbjct 3200095 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAA 3200146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109404780880868