Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3385 378 8e-100 seq17 269 3e-67 seq14 253 2e-62 seq7 116 4e-21 >seq3385 Length=62036 Score = 378 bits (418), Expect = 8e-100 Identities = 622/894 (70%), Gaps = 15/894 (2%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||| | | | | ||||| || | ||||| ||| ||||||||||| ||||| || || Sbjct 20963 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 20904 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 |||||| || |||||||||||||| ||||||| | | | | | || ||| |||||| Sbjct 20903 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 20844 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 | ||||| |||| ||| || |||||||| | ||| || ||| ||| ||| | || | | Sbjct 20843 AAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGT-TTCGTCAAAACATAGT 20785 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 | ||||| || | |||||| | || ||||| | ||| || || || || | || | Sbjct 20784 TAATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAG 20725 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACA 18955 | || | || || ||||| ||||| ||| ||| ||| ||| Sbjct 20724 CATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTACTGAA---------ACA 20674 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 ||| || ||||| ||||| || || || || || || || |||| |||||| ||||| | Sbjct 20673 TCAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAG 20614 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 | | ||||||| || ||||| || |||| ||||||||| | ||||||||||||||| | Sbjct 20613 TCAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGA 20554 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 || | || ||||| || || ||||| || || | |||||| ||| || ||| | ||| Sbjct 20553 AGGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTAT 20494 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 ||||| ||| ||||| || || || || || ||| |||||||||| || || | Sbjct 20493 CTGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTG 20434 Query 19196 AATTAAATAGATACATACGCTCATC--TGTATCTTTAACATATGCATCTATCAATAAACT 19253 |||||| | | || | || || || |||| | | || | ||||| | |||||| Sbjct 20433 CGTTAAAT--AAAAATTCCCTTTTCTTTGGATCTCTGATGTAAGTGTCTATTAGTAAACT 20376 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| ||||| |||| ||| || || |||||||| || || || || | || Sbjct 20375 GTACATCTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTC 20316 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | | ||| || || || ||| | || ||||| |||||||| || ||||||||||| Sbjct 20315 CGGAACCTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACT 20256 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 ||||||||||| ||||| | || ||||| | || || || || | | | || Sbjct 20255 GGCTGCAAAAAAGGCTAAGATGTGGGAGATAAAGTACTTCTCGTCGGATTTAAGCTTGTT 20196 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | | | || || || || || || ||||| ||||||| ||||| ||| ||| Sbjct 20195 CCAGTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGC 20136 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 || |||||||| |||| |||||| |||| || || ||||| || ||||| || Sbjct 20135 TTGCTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 Score = 176 bits (194), Expect = 5e-39 Identities = 290/416 (70%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||| | | | | ||||| || | ||||| ||| ||||||||||| ||||| || || Sbjct 21505 CATGACTGCAAATCTCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTC 21446 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 |||||| || |||||||||||||| ||||||| | | | | | || ||| |||||| Sbjct 21445 TAATGAAATGTTCTCCATAAAATCAAAGGGATTTTCTGCCTGAAAAATCTTTGAGAATCC 21386 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAAT 18835 | ||||| |||| ||| || |||||||| | ||| || ||| ||| ||| | || | | Sbjct 21385 AAGTTCTATAAGTAATCTGTCAGCTACAAACTCAATGTACTGT-TTCGTCAAAACATAGT 21327 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 | ||||| || | |||||| | || ||||| | ||| || || || || | || | Sbjct 21326 TAATTCCAATGAGGCCAACAGGCAAGGCTTCTGTTAAAAACTCCTGCTCAATTTGAACAG 21267 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACA 18955 | || | || || ||||| ||||| ||| ||| | ||||| Sbjct 21266 CATCAGCAATGATTTCCCTCACTCTGTCTTCTGAAGGCTTGTA---------CTGAAACA 21216 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 ||| || ||||| ||||| || || || || || || || |||| |||||| ||||| | Sbjct 21215 TCAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAG 21156 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 | | ||||||| || ||||| || |||| ||||||||| | ||| | |||||| Sbjct 21155 TCAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTNACGCAGA-GATCCA 21101 >seq17 Length=136257712 Score = 269 bits (298), Expect = 3e-67 Identities = 639/951 (67%), Gaps = 37/951 (4%) Strand=Plus/Plus Query 18609 TGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TCA--TTAGAATTCATTACTCC 18665 || ||| || ||| ||| ||| | ||||||||||||| ||| || || ||| ||||| Sbjct 93987348 TGCTTAGAAGTCAGCATGCAAGGTAAAAGAATTCTCTGTCAAATTCGA---CATGACTCC 93987404 Query 18666 CATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATAT 18725 ||| | ||||| ||| | ||| || |||||||| | |||||||| |||| ||| || Sbjct 93987405 CATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTCTAGTGAAAT 93987464 Query 18726 ACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAA 18785 | |||||| || ||||||||||||| ||| | | || || || | || | || | Sbjct 93987465 ATTTTCCATGAAGTCAAATGGATTTTCTACTCTGAAAATCTTCTTAACACCCAGCTCCAG 93987524 Query 18786 TAGTAGTCTATCCGCTACAAATTT-AATATATGTGTTCATCATATCACAATTCATTCCTA 18844 | | || || || || | ||| || ||| || ||||||| | |||||| || | Sbjct 93987525 TGGAAGCCTGTCAGCCAAAAAATTCAATGTACTGCTTCATCAAAGTGCAATTCGCCCCGA 93987584 Query 18845 TTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGA-T 18903 | || ||||| | || || || ||||| || || |||| | || | | | | Sbjct 93987585 AGAGCTTCACAGGCAAAGCCTCCGTGAGAAACTCCTGCCCTATCCTAACAGTGTTGGTGT 93987644 Query 18904 ATAATAGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACA 18962 | || | ||| | | || || | || || || || || || ||||||| || Sbjct 93987645 TTTATTTCTTTTACTGTTTGCTCCAAT-GGCTTGTGTACCAGGTGCTTGAACATCAGCCA 93987703 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 ||| | || || |||| ||||||||||| || || || ||||| |||| ||| | || Sbjct 93987704 GGCAGAGTCCCAGTGTAAACCCTCGTCTCTGCTAATAAACTCATTGGAAAGTGTAAGGCC 93987763 Query 19023 AGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 |||||||| | || || | ||||||||| || ||||| |||| | Sbjct 93987764 CAACATCAGTCTGCGATTCTTGAGCCAGAATATCGATGCAAAG---------AAGACT-- 93987812 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAAT 19142 ||||| || || ||||| || || | || ||||||||| | || || | | | Sbjct 93987813 -CCTTCCACCGCAGCAAAGGCCACAACTCATTCTCCATATGAGGACTCTTTGTCCCCAGT 93987871 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTT---ACACATGGCATTGTCTCTATAGAATT 19199 ||| || ||||| ||||||||||| || ||||| |||||||| | |||| ||| Sbjct 93987872 CCAACGCAAGGCCCAGTCAGCCTTCTTCTTCTTCACACAAGGCATTGTTTAAATAGCATT 93987931 Query 19200 AAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGT 19255 || ||||| | || | | |||||||| || | | ||||||| ||||| Sbjct 93987932 GAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACG----TGTCAATAAGGGGACTGT 93987987 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| || || || ||||| || || | || || || || ||||| | || |||| Sbjct 93987988 ACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAACAGCGGGCCTCTG 93988047 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | | || ||||| | ||||| || ||||| |||||||| ||||| |||||||| | Sbjct 93988048 TAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACTATGCCATCACTCG 93988107 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTC 19434 ||||||| || || | | || ||||||||| | ||||| || || | | | | Sbjct 93988108 CTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATC-CAGTTTCAGAGCTTCC 93988166 Query 19435 CAATCATTAATATCTTTAGATAAATCTA-CTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || | | |||| | || || | || | |||||| | |||||||| || ||||| || Sbjct 93988167 CAGTGTTGAATACCCTTGGAAAGGTCCACCTTCTT-GGCAGTCCAAAAGGAGGCCTCAGC 93988225 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| || ||||| | ||| |||||| | |||| || ||||| | |||||| Sbjct 93988226 TTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACAAA 93988276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || | || || | |||||| || | Sbjct 91860047 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGCTCAGCAATATGGATGT 91859988 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || |||||||| || || |||||||| || |||||||| | | || | | Sbjct 91859987 TTAAAGACTGGCTCTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 91859928 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | ||| || | ||| || || Sbjct 91859927 TCTGAGAGATTTCCCACACGGTCTTATAGAGTTGCTTCAGGTCATCAGG 91859879 >seq14 Length=152946536 Score = 253 bits (280), Expect = 2e-62 Identities = 628/937 (67%), Gaps = 41/937 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCA--TTACTCCCATT 18669 |||||| ||| || |||| | ||||||||||| | | ||||||| | || ||||| Sbjct 69609683 TTAAAAGTCAGCACCCAAGGTAAAAGAATTCTTTG---TGGAATTCACATGACGCCCATC 69609739 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| ||| | |||| || |||||||| || || ||||| |||||||| ||| | Sbjct 69609740 CACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAATGAAATATTT 69609799 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| || |||||||||||| ||| | | || || || || || | || | | Sbjct 69609800 TCCATGAAGTCAAATGGATTTCCTACTCCGAAAAATCTTGTTAAAACCCAGCTCCAGCAT 69609859 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||| || ||||||| ||| || ||||||| | || ||||| | || | Sbjct 69609860 AAGCCTATCGGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAGTTCATCTCGATGAG 69609919 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC--TGAT-AT 18905 | ||||| | || || | || | | || ||||| || |||| || | || Sbjct 69609920 CATCACAGGCAAGGCCTCCATGAGGATCCCCTGCTCTATCCCTAA--CCTCGTTGGTGAT 69609977 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || | ||||| |||| | || || || || || || ||||||| | | Sbjct 69609978 TATTTCTTTTACTCTG-CTTCGAT-GGCTTGTGTACCAGGTGCTTGAACATCAGGTAGAC 69610035 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| || || |||| |||| |||||| || || | ||||| |||||||| || || Sbjct 69610036 AAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAGGGCCCGG 69610095 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA-GAATATAC 19084 |||||| || ||| || | ||||||||| || ||||| || |||||||| ||| || Sbjct 69610096 CATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATTG 69610155 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 ||||||| | ||||| || || | || |||| |||| || | || || | | ||| Sbjct 69610156 CTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGTAACTTCTTTGTCCCCAGTCC 69610215 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | | || ||||| |||||||||| |||| |||||||| || |||| ||| || | Sbjct 69610216 AATGCAAGGCCCAGTCAGCCTTCT------CACA-GGCATTGTTTCAATAGCATTGAAAA 69610268 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATT 19260 |||| | || | | |||||||| || | | ||||||| |||||||||| Sbjct 69610269 GATATTCTCTTTCTTTGGGATCTTTAA----TGTAAATGTCAATAAGGAGACTGTACATT 69610324 Query 19261 TCTGAATGAATATTTTCTATAGCCA-TCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 | || || || |||| | |||| | | || || | |||||||| || ||||| | Sbjct 69610325 TTAGAGTGTATCCTTTCCCT-GCCAGTTTAGAAGCCAT-AAAACATCCAGCCTCTGTAAC 69610382 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || ||||| | ||||| || ||||| ||| | || | ||| |||||||| ||||| Sbjct 69610383 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGC 69610442 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTATTCCAAT 19438 ||| || || | ||||| ||||||| | | ||| || ||| |||| | Sbjct 69610443 AAAGAAAGCCAGAACATGAGCTATAAAATTTCTGTCATTCAGAG--------CTTCCCAG 69610494 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || || || || | || || || ||| | |||||||| | ||||| ||||| | Sbjct 69610495 TGCTGATCTCCTTGGAAAGGTCCACCTCCTCATCAGTCCAAAAGGTGGCCTCAGCTTTCT 69610554 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 | ||||| | ||| |||||| | || | || ||||| Sbjct 69610555 TGTACATCTGCCAGATATCATGGTACTAGATGGGAAA 69610591 >seq7 Length=104786220 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || |||| |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 35873931 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 35873990 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | ||||||||||||||| ||||| || ||||| || || ||||| || Sbjct 35873991 AGCCAGAATATTGCAGCAAATGATCCAGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 35874050 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 35874051 ACCACTCTTTCCCC 35874064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562070829550560