Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 >seq9 Length=94415995 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| |||||||||||| || || || Sbjct 34287742 GGTAACCCTTCATGGTGCACATGACATGTGTATCTTAGCTCTTCTCCAGAGGGAACCACC 34287801 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 34287802 ACAGCTGCCCACTTCTGGAAAGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 34287861 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || |||| | ||| || || | || ||||| || || || Sbjct 34287862 TCCTGGGTGTGGTTTTTCCCATCTCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAAG 34287921 Query 14352 CCCAAAGCCCAGCACC 14367 |||| |||||||||| Sbjct 34287922 CCCAGGGCCCAGCACC 34287937 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14169 CCGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACG 14228 || ||||| |||||||| || || | |||||||||||| ||||||||||||||| || Sbjct 34510418 CCAGGTAACCCTTCATGGTGGACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACC 34510477 Query 14229 ACGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCT 14288 || | |||| |||| || || || || ||||| || || || | || ||| | |||| Sbjct 34510478 ACCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCC 34510537 Query 14289 GTATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAA 14348 | || || | || | || || || | | ||| || | | || ||||| || || Sbjct 34510538 ATGTCCTGGGTGTGGTTTTTCCCATCCCTCTTCCAGGTCAGGGTGATGTCAGCTGGGTAG 34510597 Query 14349 AAACCCAAAGCCCAGCACC 14367 ||||||| |||||||||| Sbjct 34510598 AAACCCAGGGCCCAGCACC 34510616 Score = 102 bits (112), Expect = 1e-16 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||| ||| || || | |||||||||||| ||||||||||||||| || || Sbjct 34801827 GGTAACCCTTTATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 34801768 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 34801767 AAAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 34801708 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| | || | | || || | | ||| || || |||| ||||| || || || Sbjct 34801707 TCTTGGGTGTGGTTGTTCCCATCCCTCTTCCAAGTCATGGTTATGTCAGCTGGGTAGAAG 34801648 Query 14352 CCCAAAGCCCAGCACCGTA 14370 |||| |||||||||| || Sbjct 34801647 CCCAGGGCCCAGCACCTTA 34801629 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | |||||||||||| ||||||||||||||| || || Sbjct 34400708 GGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGAAGGAACCACC 34400767 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| |||| || || || || ||||| || || || | || ||| | |||| | Sbjct 34400768 ACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCCATG 34400827 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | | ||| || || | || ||||| || || || Sbjct 34400828 TCCTGGGTGTGGTTTTTCCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAGAAG 34400887 Query 14352 CCCAAAGCCCAGCACC 14367 || | |||||||||| Sbjct 34400888 CCTAGGGCCCAGCACC 34400903 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14169 CCGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACG 14228 || ||||| |||||||| | || | |||||||||||| ||||||||||| ||| || Sbjct 34844413 CCAGGTAACCCTTCATGGTTGACATGACATGTGTATCTCAGCTCTTCTCCAGGAGGAACC 34844354 Query 14229 ACGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCT 14288 || | |||| |||| || || || || ||||| || || || | || ||| | |||| Sbjct 34844353 ACCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCC 34844294 Query 14289 GTATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAA 14348 | || || | || | || ||| || | | ||| || || | || ||||| || || Sbjct 34844293 ATGTCCTGGGTGTGGTTTTTTCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAG 34844234 Query 14349 AAACCCAAAGCCCAGCACC 14367 || |||| ||||| |||| Sbjct 34844233 AAGCCCAGGGCCCAACACC 34844215 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 14169 CCGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACG 14228 || ||||| |||||||| | || | |||||||||||| ||||||||||| ||| || Sbjct 34845466 CCAGGTAACCCTTCATGGTTGACATGACATGTGTATCTCAGCTCTTCTCCAGGAGGAACC 34845407 Query 14229 ACGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCT 14288 || | |||| |||| || || || || ||||| || || || | || ||| | |||| Sbjct 34845406 ACCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTGTCTGGCAGCTCC 34845347 Query 14289 GTATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAA 14348 | || || | || | || ||| || | | ||| || || | || ||||| || || Sbjct 34845346 ATGTCCTGGGTGTGGTTTTTTCCATCCCTCTTCCAGGTCATGGTGATGTCAGCTGGGTAG 34845287 Query 14349 AAACCCAAAGCCCAGCACC 14367 || |||| ||||| |||| Sbjct 34845286 AAGCCCAGGGCCCAACACC 34845268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14169 CCGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACG 14228 || ||||| |||||||| || || | |||||||||||| ||||||||||| ||| || Sbjct 34361159 CCAGGTAACCCTTCATGGTGCACATGACATGTGTATCTCAGCTCTTCTCCAGGAGGAACC 34361218 Query 14229 ACGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCT 14288 || | |||| |||| || || || || ||||| || | || | || ||| | |||| Sbjct 34361219 ACCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTGTCTGGCAGCTCC 34361278 Query 14289 GTATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAA 14348 | || ||| | || | | || || | | ||| || | | || ||||| || || Sbjct 34361279 ATGTCCTGAGTGTGGTTGTTCCCATCCCTCTTCCAGGTCAGGGTGATGTCAGCTGGGTAG 34361338 Query 14349 AAACCCAAAGCCCAGCACC 14367 || |||| |||||||||| Sbjct 34361339 AAGCCCAGGGCCCAGCACC 34361357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 14174 TAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGAT 14233 ||| || ||||| | || | |||||||||||| |||||||||||||| ||| || | Sbjct 34696740 TAACCCCTCATGATTTACATGGCATGTGTATCTATGCTCTTCTCCAGAAGAGACCACCAC 34696799 Query 14234 AGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATC 14282 |||| ||||||| ||||| || ||||| |||| || | || |||||| Sbjct 34696800 AGCTGCCCATTTCTGAAAAGTTCCATCACCAGAAGGCCTGGTCTCTATC 34696848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629240691919840