Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3385 226 3e-54 seq17 138 1e-27 seq14 136 5e-27 seq4 91.5 2e-13 >seq3385 Length=62036 Score = 226 bits (250), Expect = 3e-54 Identities = 408/591 (69%), Gaps = 8/591 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| ||||| || | ||||||||| || || |||| |||||| ||||| || | | Sbjct 20668 CAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGT 20609 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 | ||||| | ||||| || || | ||| |||||||| ||||| |||||||| ||| || Sbjct 20608 TCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAAGGAA 20549 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| || || ||||| || || | | | || ||||| || | ||| | Sbjct 20548 ATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATCTGCT 20489 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||| | ||| || || ||| |||||| || |||||||||||||| || Sbjct 20488 ATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGCGTTA 20429 Query 37416 AAGAGAAAGttt-ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 || | ||| | ||||||| |||| | || ||||| || ||||||||||| ||||| Sbjct 20428 AATAAAAATTCCCTTTTCTTTGG-ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACAT 20370 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAA 37534 || ||||||| ||| || || |||||||| ||||| || || || || | | Sbjct 20369 CTCTGAGTGAACATTCTCGATGAGAATCTGAAAGCCATAGAAGCAGTGAGTCTCCGGAAC 20310 Query 37535 TTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGC 37594 || || || | | ||| | || | ||||||||||| || || |||||||| ||||| Sbjct 20309 CTGCACCTCCTGACTAAAACGCTCCACCAAGTTTTCATTTACAATTCCATCACTGGCTGC 20250 Query 37595 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT---AATTTTTTCCA 37651 ||| || || || || | | | || || ||| || | ||| | || ||||| Sbjct 20249 AAAAAAGGC--TAAGATGTGGGAGATAAAGTACTTC-TCGTCGGATTTAAGCTTGTTCCA 20193 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 | | | || ||||| || ||||| || || | ||||| ||| |||| ||| | Sbjct 20192 GTGAGGGAGGTCCTTTGACAAGTCAACCTCTTCTTCTGTCCAGAAAGATGCCCGTGCTTG 20133 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCT 37762 |||||||| |||| |||||| || || |||||||| || ||||| || Sbjct 20132 CTTATACATTCTCCAGATATCAGGATACTGGATTGGAAAGATGACAAACCT 20082 >seq17 Length=136257712 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 37398 ATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457 ||||||| ||| || || |||||| | | | |||| | |||| | || || || ||| Sbjct 93987915 ATTGTTTAAATAGCATTGAAGAGATATTCTCTTTCCTTGGGATCTTTAATGTACGTGTCA 93987974 Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517 || || ||| |||||||||||||| || ||||| || || | || || ||||| ||| Sbjct 93987975 ATAAGGGGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAGTTTGGAAGCCATAGAAA 93988034 Query 37518 CACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACT 37577 || | || || | | |||||| || | ||| | || | ||||||||||| ||| Sbjct 93988035 CAGCGGGCCTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTGACT 93988094 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 || |||||||| |||||||||||||| |||| | |||||||||||| ||||| Sbjct 93988095 ATGCCATCACTCGCTGCAAAGAAAGCCAGAATGTGAGCTATAAAATGTCTCTCATC 93988150 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||| | | || || || | ||| |||||||| Sbjct 93987396 CATGACTCCCATCCTCTGATACTCGCCTACTTGCTTCTCAAAGAAGTCTGTTTTTCCTTC 93987455 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||||||||| Sbjct 93987456 TAGTGAAATATTTTCCATGAAGTCAAATGGATT 93987488 >seq14 Length=152946536 Score = 136 bits (150), Expect = 5e-27 Identities = 307/456 (67%), Gaps = 13/456 (3%) Strand=Plus/Plus Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTG 37239 |||| || || |||||||| | ||||| || || | ||||| ||||| || || | Sbjct 69610035 CAAAGTCCCAGTGTAAACCCTAGTCTCTGCTAATAAGCTCATTGGAAAATGTAGGGCCCG 69610094 Query 37240 GCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA-GAAAATA 37298 |||| | || ||| || | ||| ||||| | ||||||||| |||||||| ||| || Sbjct 69610095 GCATCAGCCCCTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAAGAAGATT 69610154 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA--TAATCAGAAA 37356 |||| || | ||||| || |||| ||| | | || |||| | || | Sbjct 69610155 GCTTCTACCGTGGCAAAGGCCACAACTCGTTCTGCATATGT--AACTTCTTTGTCCCCAG 69610212 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTA 37416 |||| | | ||| || ||||| |||| || |||||||||| || || | Sbjct 69610213 TCCAATGCAAGGCCCAGTCAGCCTTCT------CACAGGCA-TTGTTTCAATAGCATTGA 69610265 Query 37417 AGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | ||| | | | |||||| |||| | || ||| | ||||| || | ||| ||||||| Sbjct 69610266 AAAGATATTCTCTTTCTTTGGGATCTTTAATGTAAATGTCAATAAGGAGACTGTACATTT 69610325 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 |||||| || |||| | | | | || |||||||| || | ||| || | | || Sbjct 69610326 TAGAGTGTATCCTTTCCCTGCCAGTTTAGAAGCCATAAAA-CATCCAGCCTCTGTAACTT 69610384 Query 37537 GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAA 37596 |||| || | ||| | || | |||||| | || | ||| |||||||| ||||||| Sbjct 69610385 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCGTTGAGTATGCCATCACTCGCTGCAA 69610444 Query 37597 AGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 37632 ||||||| ||||||| |||||||| ||| |||| Sbjct 69610445 AGAAAGCCAGAACATGAGCTATAAAATTTCTGTCAT 69610480 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| ||||| || || ||||| | || || || |||||||||||||| Sbjct 69609727 CATGACGCCCATCCACTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 69609786 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 || ||| ||||||||||| || ||||||||||| Sbjct 69609787 TAATGAAATATTTTCCATGAAGTCAAATGGATT 69609819 >seq4 Length=114123490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 16584291 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 16584232 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 16584231 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 16584199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || ||||| | || || || |||||||||||||| Sbjct 16585104 CATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 16585045 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||||||||| || ||||| ||||| Sbjct 16585044 TAGTGAGATATTTTCCATGAAGTCAAACGGATT 16585012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592276789000160