Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq18 356 2e-93
seq15 118 9e-22
seq5 82.4 6e-11
>seq18
Length=130317789
Score = 356 bits (394), Expect = 2e-93
Identities = 497/690 (72%), Gaps = 5/690 (1%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
||||||||| ||| || || | || |||||| | |||||||| || | |||| |||||
Sbjct 85151568 TGGGAAAGG-TCTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGT 85151510
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | || || ||||||| ||||||||||| || || || | || || |||| || |
Sbjct 85151509 AAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTG 85151450
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| |||||||| ||||| |||| |||||||| ||||| || || || || || ||||| |
Sbjct 85151449 CAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATAT 85151390
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
| || ||||||||||| || || || || ||||| || | ||| || |||||||| |
Sbjct 85151389 CTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGA 85151330
Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064
|| ||||| ||||| || ||||| ||| | ||||| ||||||||||| |||| ||
Sbjct 85151329 GGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGA 85151270
Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124
|||| | ||||| || |||||| | ||||| ||| | ||||||||||| || |
Sbjct 85151269 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTA 85151210
Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184
| || |||| ||| |||| ||| || ||||||||||||| ||||||||||| |
Sbjct 85151209 CTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATT 85151150
Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGC-TCGAAGCCCCTCTTGTC 30242
|||| || || || || |||||||| |||| ||| | | || || ||| ||||
Sbjct 85151149 GGAAACCATAAACTGGGCCCAGGTC-CCCT-TTCTGTCGGGCAGAAAATCCCAAGCTGTC 85151092
Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 30302
|| |||||||| ||| || ||||| |||||||| | || ||||| ||| | |||||
Sbjct 85151091 CAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTT 85151032
Query 30303 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 30362
| |||||||| || ||| ||||||| || |||||||| || ||||||| || ||
Sbjct 85151031 AGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAC 85150972
Query 30363 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAA 30422
| ||||| ||||| || ||||| | | | |||| ||| ||||| || ||
Sbjct 85150971 TCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAA 85150912
Query 30423 CACGGACAAGACTCCCGTGCCCGTCCTGTC 30452
||| |||| | || ||||| || | |||
Sbjct 85150911 CACCGACAGGGTGCCTGTGCCGGTGCGGTC 85150882
>seq15
Length=152823684
Score = 118 bits (130), Expect = 9e-22
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| || || |||||||| ||||| |||| |||||||| ||||| || ||
Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || ||||| || || ||||||||||| ||||| || || ||||| || | |
Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033
|| || |||||||| | || ||||| ||||| || ||||| |||
Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 27100269
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || ||||||||||||| ||||||||||| ||||| || || || || ||||||||
Sbjct 27105585 CATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTC 27105644
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| || | | | || ||| |||||| |||||||| ||| || ||||| ||
Sbjct 27105645 CCCTTCCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATC 27105704
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| | || ||||| ||| | ||||| | |||||||| ||
Sbjct 27105705 CCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCC 27105752
>seq5
Length=117181667
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 88589517 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 88589458
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| || || |||||||| ||||||| ||||| || |||
Sbjct 88589457 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 88589410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408590687934092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |