Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq17 136 3e-27
seq18 120 2e-22
seq11 95.1 1e-14
seq12 87.8 1e-12
>seq17
Length=136257712
Score = 136 bits (150), Expect = 3e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||||||||| || ||||| || ||||| || | | ||| | | ||||
Sbjct 39746521 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 39746462
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| |||||||| ||||| |||| | ||| ||||| || ||||| ||||| |||||
Sbjct 39746461 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 39746402
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || |||||| |||||| |||||| || | ||| || || || |||| |||
Sbjct 39746401 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGTT 39746342
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || || | || || ||| | |||||||| ||
Sbjct 39746341 TTCCCCGTAAGGGTCTTCACAGAGATCTGCATCGT 39746307
>seq18
Length=130317789
Score = 120 bits (132), Expect = 2e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || ||||||||||| || || ||||| || ||||| || | | ||| | | ||||
Sbjct 111279674 AACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 111279733
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| |||||||| ||||| | || | ||| ||||| || ||||| ||||| |||||
Sbjct 111279734 TCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 111279793
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || |||||| |||||| |||||| || | ||| || ||||| |||| |||
Sbjct 111279794 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTT 111279853
Query 101438 T 101438
|
Sbjct 111279854 T 111279854
>seq11
Length=59623150
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/207 (71%), Gaps = 1/207 (0%)
Strand=Plus/Minus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||||||||| || ||||| || ||||| || | | ||| | | ||||
Sbjct 13412272 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 13412213
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| | |||||| ||||| | || | ||| |||| || |||| ||||| || ||
Sbjct 13412212 TCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCTTCCTTGTCC 13412154
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| | || |||||| |||||| |||||| || | ||| || || || |||| |||
Sbjct 13412153 TGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 13412094
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATC 101464
|| || ||| || || |||| |||
Sbjct 13412093 TTCCCCATTAGGGTCTTCTCAAAAATC 13412067
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/207 (71%), Gaps = 1/207 (0%)
Strand=Plus/Minus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||||||||| || ||||| || ||||| || | | ||| | | ||||
Sbjct 13413223 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 13413164
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| | |||||| ||||| | || | ||| |||| || |||| ||||| || ||
Sbjct 13413163 TCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCTTCCTTGTCC 13413105
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| | || |||||| |||||| |||||| || | ||| || || || |||| |||
Sbjct 13413104 TGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 13413045
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATC 101464
|| || ||| || || |||| |||
Sbjct 13413044 TTCCCCATTAGGGTCTTCTCAAAAATC 13413018
>seq12
Length=182815943
Score = 87.8 bits (96), Expect = 1e-12
Identities = 116/161 (72%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||||||||| || ||||| || ||||| || | ||| | |||| |||| |||
Sbjct 92361959 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AAAGTATGGCCATCTTCCAGCTGC 92361904
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||| | ||||| | ||| ||||| || ||||| |||| |||| || || ||
Sbjct 92361903 TTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCCTTTCTTATTCTGGATCTTG 92361844
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427
|||||| |||||| |||||| || | ||| | |||||
Sbjct 92361843 GCCTTTACATTTTCTATAGTGTCTGAGGGTTCAATCTCAAG 92361803
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396252300609228
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |