Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq17 136 3e-27 seq18 120 2e-22 seq11 95.1 1e-14 seq12 87.8 1e-12 >seq17 Length=136257712 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 39746521 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 39746462 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||||| ||||| |||| | ||| ||||| || ||||| ||||| ||||| Sbjct 39746461 TCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 39746402 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || || || |||| ||| Sbjct 39746401 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGTT 39746342 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || | || || ||| | |||||||| || Sbjct 39746341 TTCCCCGTAAGGGTCTTCACAGAGATCTGCATCGT 39746307 >seq18 Length=130317789 Score = 120 bits (132), Expect = 2e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || ||||||||||| || || ||||| || ||||| || | | ||| | | |||| Sbjct 111279674 AACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 111279733 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||||| ||||| | || | ||| ||||| || ||||| ||||| ||||| Sbjct 111279734 TCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 111279793 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| |||||| || | ||| || ||||| |||| ||| Sbjct 111279794 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTT 111279853 Query 101438 T 101438 | Sbjct 111279854 T 111279854 >seq11 Length=59623150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 13412272 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 13412213 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| | |||||| ||||| | || | ||| |||| || |||| ||||| || || Sbjct 13412212 TCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCTTCCTTGTCC 13412154 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || | || |||||| |||||| |||||| || | ||| || || || |||| ||| Sbjct 13412153 TGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 13412094 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATC 101464 || || ||| || || |||| ||| Sbjct 13412093 TTCCCCATTAGGGTCTTCTCAAAAATC 13412067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | ||| | | |||| Sbjct 13413223 AACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCT 13413164 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| | |||||| ||||| | || | ||| |||| || |||| ||||| || || Sbjct 13413163 TCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAAGAATTCCTTCCTTGTCC 13413105 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || | || |||||| |||||| |||||| || | ||| || || || |||| ||| Sbjct 13413104 TGGGTCTTGACCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTT 13413045 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATC 101464 || || ||| || || |||| ||| Sbjct 13413044 TTCCCCATTAGGGTCTTCTCAAAAATC 13413018 >seq12 Length=182815943 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| || ||||| || | ||| | |||| |||| ||| Sbjct 92361959 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AAAGTATGGCCATCTTCCAGCTGC 92361904 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||| | ||||| | ||| ||||| || ||||| |||| |||| || || || Sbjct 92361903 TTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCCTTTCTTATTCTGGATCTTG 92361844 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG 101427 |||||| |||||| |||||| || | ||| | ||||| Sbjct 92361843 GCCTTTACATTTTCTATAGTGTCTGAGGGTTCAATCTCAAG 92361803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396252300609228