Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-34 seq3385 118 2e-21 seq17 96.9 6e-15 seq14 89.7 1e-12 >seq18 Length=130317789 Score = 161 bits (178), Expect = 2e-34 Identities = 181/240 (75%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| | || ||||| | || ||||| ||| ||||| || ||||| || ||| Sbjct 83770447 CTGGCAGCCGTTGCTGACATGGGTCAT--GACCTTCTGCTTGAGCTGCGCCACTTGCTCC 83770504 Query 241448 CGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTC 241507 || || | | || | | | ||||| || ||||| |||| |||||| |||||| || Sbjct 83770505 CGTAGGAGGCCGGCAGCACTCGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACCTTG 83770564 Query 241508 TCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGG 241567 |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | | Sbjct 83770565 TCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTG 83770624 Query 241568 TTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 83770625 TTCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 83770684 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 69197998 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 69197939 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 69197938 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 69197879 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 69197878 TTGCGCTTGCGGCATTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 69197819 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||| || ||||||||||| || ||| Sbjct 69197818 ATGCGTTCTTGCGTGTCCATGTCGATGGGCGAC 69197786 >seq3385 Length=62036 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || |||||||||||| | ||| | ||||| |||| |||||| || | || || || Sbjct 20672 CAGGCAGGCAAAGTCACAGTGAAGACCTTCATCCCTGCTGATCAGTTCATTTGAAAAAGT 20613 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 || ||||||||| || |||| || |||||||| ||||| || || || |||||||| Sbjct 20612 CAGTTCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATATTGCAGCAAATGATCCAGAGAA 20553 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 | | || || ||||| || || || || | || || || |||| || ||| | || Sbjct 20552 GGAAATTCCTTCCACAGCAGCAAAGGCCACCACTCTTTCCCCAAAAGTAGATTTCCTATC 20493 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 || |||||| || |||||||| || || ||||| | ||||||| || || || || Sbjct 20492 TGCTATCCAGCGCAGAGCCCAGTCCGCTTTTTTCTTAACATATGGCATTGTTTCAATTGC 20433 >seq17 Length=136257712 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || || ||||||||||||||| ||||| ||||||||||| ||| Sbjct 91852710 GTGTACTCTACTATTTCTGTACACAGGTTGCTGCATTTAATGGTTCCCAGGTTCTGCTGG 91852651 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| ||||| |||||||||||||| |||| |||||||| |||| Sbjct 91852650 TTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCGGTCTCCGTCTGG 91852591 Query 213648 GAC 213650 ||| Sbjct 91852590 GAC 91852588 >seq14 Length=152946536 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 91664486 TTCACTTTTTCCTCTAGCCGAGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCG 91664545 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 91664546 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 91664605 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 91664606 ATGGGGGAC 91664614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469874959360