Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3385 113 8e-20 seq7 89.7 1e-12 seq14 86.0 1e-11 seq4 84.2 4e-11 >seq3385 Length=62036 Score = 113 bits (124), Expect = 8e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| ||||| || | |||| ||||||||||||||||| || || | ||| || | Sbjct 20503 CTACTTTTGGGGAAAGAGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTCCTTCTCTGGAT 20562 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | ||||| || || |||||||| ||| ||| || |||||| | ||| ||||| | Sbjct 20563 CATTTGCTGCAATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGAACTGACTTTTTCAA 20622 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | || || ||||||||||| || ||||| ||| | || |||||||||||| Sbjct 20623 ATGAACTGATCAGCAGGGATGAAGGTCTTCACTGTGACTTTGCCTGCCTG 20672 >seq7 Length=104786220 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || || || ||| || || ||||| || || |||| Sbjct 35874054 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCTGGATCATTTGCTGCAATATTCT 35873995 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| || ||| ||||| || || || |||||||||| Sbjct 35873994 GGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACTTTTTCAAATGAACTGATCAGCAGGG 35873935 Query 26003 ACGA 26006 | || Sbjct 35873934 ATGA 35873931 >seq14 Length=152946536 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGC-GGTTCGTTTGCGGCCATCTTCTG 25943 || |||||||| | || || | ||||| || | ||||| ||||| | || ||||| Sbjct 69610177 GTGGCCTTTGCCACGGTAGAAGCAATCTTCTTTTTCTGGTTCTTTTGCATCGATATTCTG 69610118 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 ||||||| | ||||| ||| |||||| ||| |||||||| ||||| || ||||| | Sbjct 69610117 GCTCAAGAAACAGGGGCTGATG-CCGGGCCCTACATTTTCCAATGAGCTTATTAGCAGAG 69610059 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 || ||||| | ||| | || |||| || |||| | | || | ||| || | ||||| | Sbjct 69610058 ACTAGGGTTTACACTGGGACTTTGTCTACCTGATGTTCAAG---CACCTGGTACACAAGC 69610002 Query 26063 CTTC 26066 | || Sbjct 69610001 CATC 69609998 >seq4 Length=114123490 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||| || || || || ||||| || |||||| ||||| | || |||||| Sbjct 16582826 GTGGCCTTTGCCGCCGTAGAAGGAATCTTCTTTTCCGGTTCTTTTGCATCAATATTCTGG 16582885 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | |||| ||| |||||| ||| |||||||| ||||| || ||||| || Sbjct 16582886 CTCAAGAAACGGGGGCTGATG-CCGGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGA 16582944 Query 26004 CGAGG 26008 ||||| Sbjct 16582945 CGAGG 16582949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928782056533760