Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq11 286 4e-72 seq8 114 1e-20 seq14 111 2e-19 >seq11 Length=59623150 Score = 286 bits (316), Expect = 4e-72 Identities = 659/985 (67%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| ||| |||| ||| || ||| || || ||| || ||||| || Sbjct 14062689 CAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCATGTCAAACTTATTGGC 14062748 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || || ||||| | | || |||||| || ||| || | ||||| ||||| || Sbjct 14062749 AAAAAGGTGGTGTTGGCGC---AGCATCCAGCTCAAGTCACCAGCTCCGAAGACGCACAC 14062805 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || |||| || || || | || || || | || | ||||| Sbjct 14062806 AGAGCGCACGTGGACTCCACTGCACGGTGGATAAGGGGCACCGTTGGAAACATGGCCTTC 14062865 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | ||||||||||||| |||||||| || || || | |||||| || ||| || |||| Sbjct 14062866 GAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTGACAAGTCATACTTGTT 14062925 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||||||| | ||| || || | || || | || | ||||||||| ||| | Sbjct 14062926 GCTTGAGGGGAAAGA-ACCAGGGACTTCTGGGATCCTTTGGATGGTGGCCCAGAGGAACT 14062984 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCG 160408 | || |||||||| ||||||| | ||||||||| |||| | || | | | | || Sbjct 14062985 CATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTTTGAATATTTTCATTTTCC- 14063043 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || |||| || || || || || || ||||| || ||||| || || | || Sbjct 14063044 -AGCACGTAGCCTACATATTCCCTAGTGACCACGAAGTAGGCACTGCCTGAAAAGAGAGG 14063102 Query 160469 TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | || |||| ||||| | || ||||| | || | || | || | Sbjct 14063103 AGTTTTCAGTGGGGGCGGTGCTTTGACTATTCCAGTGTTGGTCAGCTTCCCATCGACAAC 14063162 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | || || || ||||| || | ||||| || ||||| || || || || | Sbjct 14063163 GGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCAGGTT 14063222 Query 160589 GTTGGCACC-GTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 ||| | || || ||| | || |||| | |||| || || ||||| || || | || | Sbjct 14063223 GTTTTCCCCTGTGGAGT-ACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGGA 14063281 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || |||| || | || |||| ||||||||| || || ||| || ||||||| Sbjct 14063282 AATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGGTCCT 14063341 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | ||||||| || || |||||||| || || || || |||| | | Sbjct 14063342 TCATGCAGTTGAGGTCTGCCTTAACCCGACTCCAGGACGCATAAACAACACTCTCCAACT 14063401 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||||||||| ||||| || || || |||| ||| |||||| || || Sbjct 14063402 GGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACCGCGGCTAAAAAGG 14063461 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || |||| ||||||||| | ||| || | ||||||||| |||||||||| Sbjct 14063462 ATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCCC 14063521 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || ||||||||||| | ||| || || || || || |||| Sbjct 14063522 TCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACAATGGAATATGCAATTGGAA 14063581 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | ||| || | | |||| | | | || || || ||| |||| ||| | Sbjct 14063582 AGCCTACCTCTTCTTTAGTAAGGGGCTCCACAATATATTTGCGTGTCCTGATGAAAGAGG 14063641 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||| || || |||||||| ||||| Sbjct 14063642 CACAGTCACGGGTCATGTTTATATA 14063666 >seq8 Length=97876770 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || | ||| || || |||||||||||||| ||| Sbjct 43541070 TAGAGGGTAAGGCAAGCTGTTCCTGAGACCTTCTGAGAACCAAACGTGTTGAAGAGACAC 43541129 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| |||| || || || |||| || || ||||| || || | ||||||| | ||| Sbjct 43541130 ATGTAGCAACCCTCATCTTCCAATGTTGTGTTCCAGAAGGTGATGCTTGAGTTCCAGAGT 43541189 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || | || | | ||||| || | ||| || | |||||| || ||| | Sbjct 43541190 CCCAGCTCTGTGACATTTATCCTGTCTTTGTAGGCAGGCTGGATTACAACCCCATGGATT 43541249 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| ||||| ||||||| || ||||| ||| || | |||||||| || || ||| Sbjct 43541250 TTGCTGTAGGTGACCATGTTTTCTGGGCTCACGGCTTTCTTTTTCTGCCATGTCACAATC 43541309 Query 168390 A 168390 | Sbjct 43541310 A 43541310 >seq14 Length=152946536 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| ||| |||| || |||| | |||| | ||||| || |||| | | | Sbjct 22317548 AGATATTTTGCTAACTCACTGGGAGAGTTAAAATCTTCCACATGAATGAATGAATCAGCT 22317607 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || || || | || | ||||| | || || Sbjct 22317608 GGAATATAATTCTCATAGTTTTCCCTAGATGGACCCAGGACAACAGGTACTGAACCAGCC 22317667 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||||| |||||| || ||||||||||||||||||||| Sbjct 22317668 AAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAAGAA 22317727 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 22317728 AGATAAAATTTACA 22317741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577180208843040