Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq17 122 2e-22 seq18 102 2e-16 seq16 100 6e-16 seq14 95.1 2e-14 seq12 87.8 4e-12 >seq17 Length=136257712 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | |||| ||| ||| || || || || |||| Sbjct 39746537 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAG 39746479 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || |||||||||||||| | ||||| |||||||| | Sbjct 39746478 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAG 39746419 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 39746418 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 39746359 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| || |||||||| || || | || || | | | |||||||| Sbjct 39746358 CCTCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq18 Length=130317789 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || ||||| | || | ||| ||| || || || || |||| Sbjct 111279658 ACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 111279716 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| || ||||||||||||| | ||||| |||||||| | Sbjct 111279717 ACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAG 111279776 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||||| || || | ||| | Sbjct 111279777 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 111279836 Query 192488 CTTCTAGAGTAATGGTTT 192505 | || || || ||||||| Sbjct 111279837 CCTCAAGCGTGATGGTTT 111279854 >seq16 Length=150978388 Score = 100 bits (110), Expect = 6e-16 Identities = 161/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | || | ||| ||| || || || || |||| Sbjct 3200025 ACCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAG 3200083 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || ||||||||||||| | ||||| |||||||| | Sbjct 3200084 ACAAAGTCCGTCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAG 3200143 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | | || ||||| || || || |||||||| |||||| ||||| | ||| | Sbjct 3200144 GAAGTC-----TTATCCTGGATCTTGGCCTTTACATTTTCTATAGAGTCTGAGGGTTCAA 3200198 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || || |||||||| || || | || || | ||| |||||||| Sbjct 3200199 CCTGGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAAATCTGCAT 3200247 >seq14 Length=152946536 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || || |||| |||| || |||||||||||| | || ||| Sbjct 128583657 ATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGGTCAACCTC 128583716 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || | | |||| ||||| || | || |||||||| ||||| Sbjct 128583717 TGCTGATCAGGAGGAAGTTCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATAGTG 128583776 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA-TGTTTTAATAAATATCTG 192533 || || | ||| || || || || |||||||| || ||| || || | ||| ||||| Sbjct 128583777 TCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCCATAAGGGTCTTCACAAAGATCTG 128583836 Query 192534 CATT 192537 |||| Sbjct 128583837 CATT 128583840 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || || |||| |||| | |||||||||||| | || ||| Sbjct 131977030 ATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCGGCTTACCAGCAAAGGTCAACCTC 131977089 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || | |||||| ||||| || | || |||||||| ||||| Sbjct 131977090 TGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTACTATAGTG 131977149 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || || || |||| || || | | || || | ||| |||||| Sbjct 131977150 TCCGAGGGTTCAACCTCGAGCGTGATGGCCTTCCCCATAAGGGTCTTCACAAAAATCTGC 131977209 Query 192535 AT 192536 || Sbjct 131977210 AT 131977211 >seq12 Length=182815943 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||||||||| | ||||| |||||||| || |||||||| ||||| || | || Sbjct 146741637 TTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTG 146741696 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 |||||||| ||||| || | | ||| || || || || |||||||| || || Sbjct 146741697 ACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCCAGCGTGATGGTTTTCCCCGTA 146741756 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 146741757 AGGGTCTTCACAAAAATCTGCAT 146741779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984411835835400