Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq17 113 8e-20 seq18 95.1 2e-14 >seq17 Length=136257712 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | |||| ||| || ||| || Sbjct 39746546 TTTCTTAGCACCACCCCGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTT 39746487 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| || ||||||||||| || | ||||| || Sbjct 39746486 GTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTG 39746427 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| |||||| || || Sbjct 39746426 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGA 39746367 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| || ||||| || |||||||| || || | || || | | |||||||| Sbjct 39746366 GGGTTCAACCTCTAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq18 Length=130317789 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || ||||| | || | ||| || ||| || || || || Sbjct 111279658 ACCACCCCGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 111279717 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||| || ||||||||||| | | ||||| || ||||| || Sbjct 111279718 CAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGG 111279777 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| ||||| || || || |||||||| |||||| || || | ||| || Sbjct 111279778 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 111279837 Query 172022 TTCTAGAGTAATGGTTT 172038 || || || ||||||| Sbjct 111279838 CTCAAGCGTGATGGTTT 111279854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905074858063200