Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 4e-13 >seq17 Length=136257712 Score = 91.5 bits (100), Expect = 4e-13 Identities = 217/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||||| | || || ||| | || | || || ||||||||||| || ||| | | Sbjct 93988276 TTTGTTGTCTTTCCCATTGAATACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCC 93988217 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAG--ACCCAGCCCACTGGGAAGCCC 133193 | ||||||||| | | | || || | ||||| | | || | |||||||||| | Sbjct 93988216 TCCTTTTGGACTGCCAAGAAGGTGGACCTTTCCAAGGGTATTCAAC--ACTGGGAAGCTC 93988159 Query 133194 TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATG 133253 | | |||||| | ||||||||| || ||| | || || ||||| |||||||||| Sbjct 93988158 TGAAACTGGATGAGAGACATTTTATAGCTCACATTCTGGCTTTCTTTGCAGCGAGTGATG 93988099 Query 133254 GTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCC 133313 | || || |||||| || | || |||| |||||||||| | | || |||| Sbjct 93988098 GCATAGTCAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTTACAGAGGCCC 93988039 Query 133314 GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTC 133373 | || ||||| | || | ||| |||||||| || || ||| | || | | | Sbjct 93988038 GCTGTTTCTATGGCTTCCAAACTGCCATGGAAAACATACACTCTGAAATGTACAGTCCCC 93987979 Query 133374 TAATTGATACTTACATCAAAGATACC 133399 | ||||| || ||||| |||||| || Sbjct 93987978 TTATTGACACGTACATTAAAGATCCC 93987953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471715693189148