Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 149 8e-30 seq13 131 2e-24 seq14 122 1e-21 seq5 116 5e-20 seq17 98.7 1e-14 >seq3 Length=125065471 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 58204023 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 58203964 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 58203963 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 58203904 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | ||| |||||||| ||| || | Sbjct 58203903 TGTCATTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCGGTGTCCGGAT 58203844 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 58203843 GCACCTGCTTCAGCACCTTGTA 58203822 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| | |||||| | || Sbjct 58208852 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCGCGGGACGTGA 58208911 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 58208912 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAGA 58208971 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | ||| |||||||| ||| || | Sbjct 58208972 TGTCATTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCGGTGTCCGGAT 58209031 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 58209032 GCACCTGCTTCAGCACCTTGTA 58209053 >seq13 Length=160222558 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | |||||||| | ||||||||||| |||| || Sbjct 94122399 GCTTGGCCAGTTCTCCGGGCAGTAGAAGGCGCACCGACGTCTGGATCTCCCGCGATGTGA 94122340 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| | |||||||| || |||||| | | ||||| || | | Sbjct 94122339 TTGTAGACCGCTTGTTGTAATGCGCCAGGCGAGAAGCCTCGTTTGCTATGCGCTCAAAGA 94122280 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||||||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 94122279 TGTCATTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 94122220 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 94122219 GCACCTGCTTCAGCACTTTGTA 94122198 Score = 107 bits (118), Expect = 2e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| |||||||| ||||||||||| || | ||| || ||||||||| | ||||| Sbjct 94174270 CAGACGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAATGCGC 94174211 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||||||| ||||| ||||||| |||| || ||||| || || || ||||||| Sbjct 94174210 CAGACGGGAAGCCTCACCTGCGATGCGCTCGAAGATATCGTTCACGAAGGAATTCATGAT 94174151 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| ||||||||| |||||| ||||| ||||| || |||||||| Sbjct 94174150 TCCCATAGCCTTAGATGAGATGCCCGTGTCGGGATGCACTTGCTTCAGGACCTTGTA 94174094 >seq14 Length=152946536 Score = 122 bits (134), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || || | ||||||||| |||||||||||||| || | || Sbjct 115989377 GCTTGGCCAGCTCCCCAGGCGGCAGCAGGCGCACTGCGGTCTGGATCTCCCGGGACGTGA 115989318 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || | ||||||| | |||||||| || || || | ||||||| |||| | Sbjct 115989317 TGGTCAAGTGCTTGTTGTAATGCGCCAGGCGCGACGCAACGCTCGCGATGCGCTCGAAGA 115989258 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 115989257 TGTCGTTCACGAA-GAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 115989199 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 115989198 GCACTTGCTTCAGCACCTTGTA 115989177 >seq5 Length=117181667 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | | || Sbjct 19295014 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAGGTGA 19295073 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 19295074 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 19295133 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 ||||||| || ||||||||||||| Sbjct 19295134 TGTCGTTCACGAACGAGTTCATGA 19295157 >seq17 Length=136257712 Score = 98.7 bits (108), Expect = 1e-14 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGC----GCACGGCGGTCTGGATCTCGCGCGTG 1254398 || ||||||| || | | | | | ||||| ||||||| |||||||||| | | Sbjct 50084295 GCTTGGCCAGCTCCCTGGGGAGCAGCAGGCATAAGCACGGCCCTCTGGATCTCCTGGGAC 50084236 Query 1254399 CCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGA--CGGCCGGC--CTCGGTGCCGATGCG 1254454 ||| || ||||||||| | || ||||| || ||| | || | | |||| | Sbjct 50084235 GTGATGGTCAAGCGCTTGTTGTAATGTGCCAGGTGCGACCGACACCTTGCTTGTGATGTG 50084176 Query 1254455 GTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCAC 1254514 |||| |||||||| || ||||||||||||| ||| | |||| ||||||||| Sbjct 50084175 CTCGAAGATGTCGTTCACGAACGAGTTCATGATGCCCATGGTCTTGGAGGAGATGCCGGT 50084116 Query 1254515 GTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||| ||||||||||| Sbjct 50084115 GTCGGGGTGCACTTGCTTCAGCACCTTGTA 50084086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106695722453068