Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 145 7e-30 seq8 122 8e-23 seq18 120 3e-22 seq15 116 3e-21 seq16 109 5e-19 seq11 109 5e-19 seq6 98.7 9e-16 seq3 93.3 4e-14 seq12 82.4 7e-11 seq10 82.4 7e-11 >seq17 Length=136257712 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||| | | || || || || || ||||| || ||||| || || ||| || Sbjct 39746307 ACGATGCAGATCTCTGTGAAGACCCTTACGGGGAAAACCATCACGCTAGAGGTTGAACCC 39746366 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||| Sbjct 39746367 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 39746426 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | |||| || || Sbjct 39746427 CAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTAC 39746486 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || |||||||| || | || || || Sbjct 39746487 AACATTCAAAAGGAGTCTACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 39746536 >seq8 Length=97876770 Score = 122 bits (134), Expect = 8e-23 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || | || || || || |||||||| || ||| || Sbjct 13844311 GATGCAGATTTTTGTGAAGACCCTTATGGGGAAGACCATCACGCTCGAGGTTGAACCCCT 13844370 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 13844371 GGACACCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 13844430 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | || ||||||| || || |||||||| ||| | | || ||| || || || Sbjct 13844431 GCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATG-GCCATACTTGTTTGACTACAA 13844489 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 |||||||||||| || || || || | |||||| Sbjct 13844490 CATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 13844523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 24745 GCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGA 24804 |||||| || ||| || ||||| |||||| ||||| |||||||| || || || Sbjct 13420357 GCTCGAGGTTGAACCCCTGGACACCATAGAAAATGTAAAGTCCAAGATCCAGGATAAGGA 13420416 Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 |||| | ||||| ||||| || | || ||||||| || || |||||||| ||| | Sbjct 13420417 AGGACTTCCTCCTGATCAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATG-GCC 13420475 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 | || ||| || || |||||||||||||| || || || || Sbjct 13420476 ATACTTGTTTGACTACAACATTCAAAAGGAGTCCACCCTTCA 13420517 >seq18 Length=130317789 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 24735 AAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCC 24794 |||| || ||||| || || ||| || | ||||| |||||| ||||| ||||||| Sbjct 111279854 AAACCATCACGCTTGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAGATCC 111279795 Query 24795 AAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGG 24854 | || || |||||||| ||||| ||||| || | || ||||||| || || ||||||| Sbjct 111279794 AGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGG 111279735 Query 24855 AGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGT 24914 | ||| | | |||| || || |||||||||||||| || || || || ||||||| Sbjct 111279734 AAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTGT 111279675 Query 24915 TGCGATTGCGCGGAGG 24930 || || | || || || Sbjct 111279674 TGAGACTTCGGGGTGG 111279659 >seq15 Length=152823684 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | ||||| |||| ||||| || || || || || || || || Sbjct 125085174 ACGATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCC 125085115 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||| ||||| || || || || || || Sbjct 125085114 AGTGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 125085055 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||||||||| Sbjct 125085054 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTAC 125084995 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 125084994 AACATCCAGAAAGAGTCCACCCTGCACCTGGT 125084963 >seq16 Length=150978388 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || || || || ||||| || || ||| | || ||| || Sbjct 3200250 ACGATGCAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACACTCCAGGTTGAACCC 3200191 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | |||||| ||||| |||||||| || || || | ||||| ||| Sbjct 3200190 TCAGACTCTATAGAAAATGTAAAGGCCAAGATCCAGGATAA-----GACTTCCTCCTGAT 3200136 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | || ||||||| || || |||||||| ||| | | |||| || || Sbjct 3200135 CAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAAGATGGACGGACTTTGTCTGACTAC 3200076 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || |||||||| || | || || || Sbjct 3200075 AACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 3200026 >seq11 Length=59623150 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || |||| || ||||| || |||||||| || ||| || | ||||| |||||| Sbjct 13412077 AAGACCCTAATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAAT 13412136 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 ||||| |||| ||| ||||| |||||||| | ||| |||| || | || ||||| Sbjct 13412137 GTAAAGGTCAAGACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGAGGCTGGTCTTT 13412196 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||||| ||| | | |||| || || |||||||||||||| || Sbjct 13412197 GCTGGTAAG-AGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCT 13412255 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || |||||||| || | || || || Sbjct 13412256 ACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 13412287 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || |||| || ||||| || |||||||| || ||| || | ||||| |||||| Sbjct 13413028 AAGACCCTAATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAAT 13413087 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 ||||| |||| ||| ||||| |||||||| | ||| |||| || | || ||||| Sbjct 13413088 GTAAAGGTCAAGACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGAGGCTGGTCTTT 13413147 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||||| ||| | | |||| || || |||||||||||||| || Sbjct 13413148 GCTGGTAAG-AGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCT 13413206 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || |||||||| || | || || || Sbjct 13413207 ACCCTTCATCTGGTGTTGAGACTTCGGGGTGG 13413238 >seq6 Length=117542938 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/230 (69%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||| ||| | || || || || || ||||| || || |||| Sbjct 35538955 ACGATGCAGATTTTTGTGAAGACCCTTACAGGGAAAACCATCACCCTCG----------- 35538907 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| |||||| ||||| |||| ||| || || |||| | | ||||| ||| Sbjct 35538906 ---GACACTATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGAACTTCCTCCTGAT 35538850 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | |||| || || Sbjct 35538849 CAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 35538790 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| || || || || |||||||| || | || || || Sbjct 35538789 AACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGAGGTGG 35538740 >seq3 Length=125065471 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || | || || || || || || || ||||| ||| Sbjct 98064818 ATGCAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTAGAGCCCAGT 98064759 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| || || | || || || || Sbjct 98064758 GACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAGGGCCTCCCACCTGACCAG 98064699 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| || ||||| |||||||| |||||| | | |||| ||||| ||| Sbjct 98064698 CAGAGGCTGATATTCGCCGGCAAACAGCTAGAGGATGGCCACACCCTGTCTGATTACAAC 98064639 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || || || || || | ||| ||||| |||| | || || ||| | |||||| Sbjct 98064638 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTTCGAGGTGGCATCATTGAGCC 98064580 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 62144447 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 62144506 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || ||||| || || || || || || Sbjct 62144507 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 62144566 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || ||||| || ||| | | | | || ||||| ||| Sbjct 62144567 CAGAGGCTGATCTTTGCGGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGATTACAAC 62144626 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 62144627 ATCCAGAAAGAGTCGACCCTGCACCTGGT 62144655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 62144675 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 62144734 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || ||||| || || || || || || Sbjct 62144735 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 62144794 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || ||||| || ||| | | | || ||||| ||| Sbjct 62144795 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAAC 62144854 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 62144855 ATCCAGAAAGAGTCGACCCTGCACCTGGT 62144883 >seq12 Length=182815943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/176 (71%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 24755 GAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCT 24814 ||| || | ||||| |||||| ||||| |||||||| | || ||||||| ||| Sbjct 92361812 GAACCCTCAGACACTATAGAAAATGTAAAGGCCAAGATCCAGAATAAGAAAGGAATTCCT 92361871 Query 24815 CCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA 24874 || ||||| || | ||||||| ||| || || |||||||| ||| | | || | Sbjct 92361872 CCTGATCAGCAGAGGTTGATCTGTGCTGGCAAGCAGCTGGAAGATG-GCCATACTTT--- 92361927 Query 24875 GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||||||||| || || || || | |||||| || | || || || Sbjct 92361928 GACTACAACATTCAAAAGGAGTCTACCCTTCAACTCGTGTTGAGACTTCGTGGTGG 92361983 >seq10 Length=90668104 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || ||| ||||| | || | Sbjct 33660661 AAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATCGAGAAT 33660602 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| ||||| || ||||| || || || | |||| || Sbjct 33660601 GTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATATTC 33660542 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 | || ||||||||||||||| | | | |||| || || ||||| || || || || Sbjct 33660541 TCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCC 33660482 Query 24899 ACACTACACTTGGTGTTGCG 24918 || | ||| ||||| |||| Sbjct 33660481 ACCTTGCACCTGGTGCTGCG 33660462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449867209417120