Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq15 138 7e-28 seq3 118 7e-22 seq20 93.3 3e-14 seq16 86.0 4e-12 >seq15 Length=152823684 Score = 138 bits (152), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| ||||| || || || ||| |||| |||| Sbjct 125084960 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCT 125085019 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || |||||||| | |||||||| | || | ||||||||||| Sbjct 125085020 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 125085079 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || ||| ||||| || || || | ||| ||| |||||| || | ||| |||| Sbjct 125085080 TGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGG 125085137 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||| || |||||||||||||| Sbjct 125085138 TCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | |||| | ||||| |||| ||||| || ||| || | |||| Sbjct 26701591 CAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGGCCATC 26701650 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||| | || || ||||| ||||| | |||||||| | || | || |||||||| Sbjct 26701651 CTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTGTC 26701710 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| || ||| |||| || ||| Sbjct 26701711 TTGGATCTTGACCTTGAC--ATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATG 26701768 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || |||||||| | |||||||||||| Sbjct 26701769 GTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATG 26701804 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||||| | |||| | ||||| |||| ||||| || ||| || | |||| Sbjct 26702796 CAGCACCAGGTACAAGGTGGAATGGTTCTGGATGTAGTAGTCGGAAAGGGTGTGGCCATC 26702855 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||| | || || ||||| ||||| | |||||||| | || | || |||||||| Sbjct 26702856 CTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTGTC 26702915 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| || ||| |||| || ||| Sbjct 26702916 TTGGATCTTGACCTTGAC--ATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATG 26702973 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || |||||||| | |||||||||||| Sbjct 26702974 GTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATG 26703009 >seq3 Length=125065471 Score = 118 bits (130), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||| ||||| ||||| || || || ||| || | |||| Sbjct 98064606 CAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCATC 98064665 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || || || |||||||| ||||| | |||||||| | || | ||||||||||| Sbjct 98064666 CTCTAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTC 98064725 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | ||| ||| ||| || |||| || ||| Sbjct 98064726 TTGGATCTTGGCCTTTAC--ATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATG 98064783 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||| | |||||||| || |||||||||||| Sbjct 98064784 GTCTTGCCCATCAGGGTCTTCACGAAGATCTGCATG 98064819 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 62144673 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 62144614 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| || || ||||| || || |||||||| | |||||||| | || Sbjct 62144613 AGGGTGCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 62144554 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| || || | || || || ||| | || | ||| ||| ||| || Sbjct 62144553 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 62144494 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 62144493 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 62144447 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 62144901 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAG 62144842 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| ||||| |||||||| | |||||||| | || Sbjct 62144841 AGAGTGCGGCCATCTTCTAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 62144782 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||| || || | || || || || || || || | ||| ||| ||| | Sbjct 62144781 ATGCCCTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 62144724 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 62144723 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 62144674 >seq20 Length=148322235 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| || || || | | |||| |||| Sbjct 135500343 AGGACCAGGTGCAGGGTCAACTCTTTCTGGATGTTGTAATCAGAGAAGGTGCGGCCATCT 135500402 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || ||||| || | |||||||| | | | ||||| || || Sbjct 135500403 TCCAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC-GGGGTGATGCCCTCTTTATCC 135500461 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | |||| ||| ||| | || | ||| |||| Sbjct 135500462 TGGATCTTGGCCTTCAC--ATTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGG 135500519 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| | ||||| ||||| Sbjct 135500520 TCTTGCCAGTCAGGGTCTTCTCGAAGATTTGCAT 135500553 >seq16 Length=150978388 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 ||||| || || || || |||| |||| || || ||||| || || |||||||| | Sbjct 58879370 ATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTC 58879429 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT 34915 ||||||| | || | ||||| || || | || || || ||| |||| | Sbjct 58879430 TGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTG 58879489 Query 34916 TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 ||| ||| ||| || || | ||| |||||||| || || |||||||| | |||||||||| Sbjct 58879490 TCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGC 58879549 Query 34976 AT 34977 || Sbjct 58879550 AT 58879551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325671349465076