Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 1e-14 seq6 91.5 1e-13 seq18 84.2 2e-11 >seq17 Length=136257712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || ||||||||||| || || | ||| ||||| |||||||| Sbjct 39746403 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAA 39746462 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||||||||||||||| | || |||||||| Sbjct 39746463 GATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTGGTGTTG 39746522 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 39746523 AGACTTCGGGGTGGTGCTAAGAAAA 39746547 >seq6 Length=117542938 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||| |||||||| || | | || || | ||| Sbjct 35538852 GATCAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAC 35538793 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||||||||| || | || ||||||||||| | ||||| || Sbjct 35538792 TACAACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGAGGTGG 35538740 >seq18 Length=130317789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || ||||||||||| || | | ||| ||||| |||||||| Sbjct 111279792 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGGAA 111279733 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | ||||||||||||||||||||||| || | || |||||||| Sbjct 111279732 GATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTGTTG 111279673 Query 107769 AGATTGCGAGGGGG 107782 ||| | || || || Sbjct 111279672 AGACTTCGGGGTGG 111279659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398850529475356