Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-15 >seq1 Length=198846266 Score = 98.7 bits (108), Expect = 3e-15 Identities = 207/301 (69%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 188756 AAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAA 188815 ||||| |||| || | | |||| || ||||| ||||||||||| | | || |||| Sbjct 174181515 AAAAAAGTAATATTTTGCTGCTTGGACCAACTGGGTCAGGTAAAACCCTGCTGGCACAAA 174181456 Query 188816 CATTGGCTGATATGT-TACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 | || ||| | ||| | |||| ||| | ||||||| ||| || |||| || | Sbjct 174181455 CTTTAGCTAA-ATGCCTTGATGTTCCTTTTGCTATCTGTGACTGTACAACTTTGACCCAG 174181397 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCGTTTAATCCAAGCAGCTGA 188933 ||||| ||||||||||||||| | ||| || ||||| || |||||| || | Sbjct 174181396 GCTGGATATGTAGGTGAAGATATTGAATCTGTGATTGC-CAAACTACTCCAAGATGCCAA 174181338 Query 188934 TTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGC 188993 |||| || | || ||| ||| |||||||| | | | |||||||||||||| |||| Sbjct 174181337 TTACAATGTAGAGAAAGCACAACAAGGAATTGTCTTTCTGGATGAAGTAGATAAGATTGG 174181278 Query 188994 TAGAAAATCAGAAAGCA--CATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAA 189051 || ||| ||| |||| ||| || |||||| ||| ||||| || |||||| Sbjct 174181277 CAGTGTGCCAG---GCATTCATCAGTTA--CGGGATGTAGGTGGAGAAGGCGTTCAGCAA 174181223 Query 189052 G 189052 | Sbjct 174181222 G 174181222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591800178113792