Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 9e-16 seq16 91.5 1e-13 >seq4 Length=114123490 Score = 98.7 bits (108), Expect = 9e-16 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACC 21062 || ||||||||||| |||||||| || ||||| ||||||||| ||| |||| | | Sbjct 15020532 TTCATGTATTATGTGAATGATGGAGTATATGGATCATTTAACTGC--ATTCTTTAAGATC 15020589 Query 21063 ATGCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTT 21121 |||| | | | | | |||||| || ||| | ||| || || || | || Sbjct 15020590 ATGCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCA 15020648 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | ||||| |||| ||| | || Sbjct 15020649 TCCAGCATCTGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTAACCTA 15020708 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || |||||||| ||| | | ||||| |||||||| || |||| | | | | Sbjct 15020709 CCTGAAATGCATGTGGGCGATTGGATGCTGTTTGAGAACATGGGTGCATACACCGTTG-C 15020767 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAGAG 21298 ||| |||| || || || || |||| | |||| | | ||||||| || ||| || Sbjct 15020768 TGCTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCACAG 15020825 Score = 98.7 bits (108), Expect = 9e-16 Identities = 205/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACC 21062 || ||||||||||| |||||||| || ||||| ||||||||| ||| |||| | | Sbjct 15020988 TTCATGTATTATGTGAATGATGGAGTATATGGATCATTTAACTGC--ATTCTTTAAGATC 15021045 Query 21063 ATGCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTT 21121 |||| | | | | | |||||| || ||| | ||| || || || | || Sbjct 15021046 ATGCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGATGAGAAGTATTACTCA 15021104 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | ||||| |||| ||| | || Sbjct 15021105 TCCAGCATCTGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTAACCTA 15021164 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || |||||||| ||| | | ||||| |||||||| || |||| | | | | Sbjct 15021165 CCTGAAATGCATGTGGGCGATTGGATGCTGTTTGAGAACATGGGTGCATACACCGTTG-C 15021223 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAGAG 21298 ||| |||| || || || || |||| | |||| | | ||||||| || ||| || Sbjct 15021224 TGCTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCACAG 15021281 >seq16 Length=150978388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 199/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||||||||| |||||||| || |||||| ||||||||| | | | | | ||| Sbjct 132682791 TTCATGTATTATGTGAATGATGGAGTATATGGCTCATTTAACTGCTTTCTTTATGATCAT 132682732 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | | | | |||||| || ||| | ||| || || || | ||| || Sbjct 132682731 GCCCATGTGAAGGCCCTGCTGCAGAAGAGACCCAAGCC-AGACGAGAAGTATTATTCATC 132682673 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||| | || | | |||||| | ||| | ||||| |||| ||| | ||||| Sbjct 132682672 CAGCATCTGGAGACCAACATATGATGGCCTTGATCGGATTGTGGAGCGCTGTAACCTGCC 132682613 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAG 21243 || | || ||||| || ||| | | ||||| |||||||| || |||| || | | Sbjct 132682612 TGAAATGCATGTGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACA-CTGTTGCTG 132682554 Query 21244 CT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 || |||| || || || || |||| | |||| | | ||||||| || ||| Sbjct 132682553 CTGCTTCTACTTTCAATGGGTTCCAGAGGCCAAACATCTACTATGTAATGTCA 132682501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463514287494720