Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17 127 4e-24 seq8 114 3e-20 seq16 109 1e-18 seq12 105 1e-17 seq18 102 2e-16 seq14 96.9 7e-15 seq5 93.3 8e-14 seq6 91.5 3e-13 seq15 87.8 4e-12 >seq17 Length=136257712 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || || || || || || ||||| | | | | || ||||| || || Sbjct 39746512 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 39746453 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| |||||||||||||| || ||||| Sbjct 39746452 TTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 39746393 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || || | || || || || || || Sbjct 39746392 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGTGATGGTTTTCCCCGTA 39746333 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||| | |||||||| Sbjct 39746332 AGGGTCTTCACAGAGATCTGCAT 39746310 >seq8 Length=97876770 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || |||||||||| || || || ||||| ||||| ||||||||| Sbjct 13844469 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 13844410 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || || || ||||| || || | || Sbjct 13844409 TTATCCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTG 13844350 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || ||||| || | | ||||| ||||| |||||||| || Sbjct 13844349 ATGGTCTTCCCCATAAGGGTCTTCACAAAAATCTGCATCAT 13844309 >seq16 Length=150978388 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 82629 ATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTT 82688 || || |||||||| ||| | | || |||||||| || || ||||||||||| || || Sbjct 58879370 ATGTTGTAATCAGAGAGAGTGCGGCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTC 58879429 Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || | || || || || || ||||| || ||||| || || || || || || || Sbjct 58879430 TGCTGGTAAGGGGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTCTCTATGGTG 58879489 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || || || || | || || |||||||| |||| ||||| | ||| |||||| Sbjct 58879490 TCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGC 58879549 Query 82809 ATT 82811 ||| Sbjct 58879550 ATT 58879552 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 3200050 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGTCCATCTTCCAGCTGC 3200109 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || || || ||||| ||||| | || ||||| || ||||| Sbjct 3200110 TTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAAGTC-----TTATCCTGGATCTTG 3200164 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || | || ||||| || | | || || || || || || Sbjct 3200165 GCCTTTACATTTTCTATAGAGTCTGAGGGTTCAACCTGGAGTGTGATGGTTTTCCCCGTA 3200224 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 3200225 AGGGTCTTCACAAAAATCTGCAT 3200247 >seq12 Length=182815943 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| |||||||||||||| || |||| Sbjct 146741637 TTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTG 146741696 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||||||||| || || || ||||| || |||| || || || || || || Sbjct 146741697 ACCTTTACATTTTCTATAGTGTCCCAGGGTTCAACCTCCAGCGTGATGGTTTTCCCCGTA 146741756 Query 82788 AACGTCTTTACAAATATCTGCATTAT 82813 | ||||| ||||| |||||||| || Sbjct 146741757 AGGGTCTTCACAAAAATCTGCATCAT 146741782 >seq18 Length=130317789 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || || || || || || || || ||||| | | | | || ||||| Sbjct 111279677 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 111279736 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || |||||||||| || || || ||||| ||||| |||||||||||||| || Sbjct 111279737 AGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 111279796 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| || ||||||||||| || || || Sbjct 111279797 ATCTTGGCCTTTACATTTTCTATAGTGTC 111279825 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || ||||||||||| || | || ||||| ||||| ||||||| ||||| || ||| Sbjct 51697737 TGCTTACCAGCAAAGATCAGGTTCTGCTGATCAGGAGGAATTCCTTTTTTATCATGGATC 51697796 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||| || || || | |||| || || | | || ||||| ||| Sbjct 51697797 TTGGCCTTTACATTTTCTATAGTGTCCAAAAGTTCAACCTCAAGCATGATGGTCTTCCCT 51697856 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 | | ||||| ||||| ||||||| Sbjct 51697857 ATAATGGTCTTCACAAAAGTCTGCAT 51697882 >seq14 Length=152946536 Score = 96.9 bits (106), Expect = 7e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 || || ||||| | || || || || ||||| | | | | || ||||| || | || Sbjct 131977012 AGGGTGGATTCCCTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCGGCTTA 131977071 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||| | | || || ||||| ||||| | |||||||||||| || |||| || Sbjct 131977072 CCAGCAAAGGTCAACCTCTGCTGATCAGGAGGAAGTCCTTCCTTATCCTGGGTCTTGGCC 131977131 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||| | || || || ||||| || || | || || | ||| || | | Sbjct 131977132 TTTACATTTACTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGCCTTCCCCATAAGG 131977191 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 ||||| ||||| |||||||| || Sbjct 131977192 GTCTTCACAAAAATCTGCATCAT 131977214 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 82626 TGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGT 82685 || || || || ||||| | | | | || ||||| || || || ||||||||| | | Sbjct 128583654 TGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGGTCAAC 128583713 Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || || ||||| ||||| | | |||||||||| || |||| || ||||||||||| || Sbjct 128583714 CTCTGCTGATCAGGAGGAAGTTCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATA 128583773 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT-GCCTGTCAACGTCTTTACAAATAT 82804 || || ||||| || || | || || || || || | | ||||| ||||| || Sbjct 128583774 GTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCCATAAGGGTCTTCACAAAGAT 128583833 Query 82805 CTGCATT 82811 ||||||| Sbjct 128583834 CTGCATT 128583840 >seq5 Length=117181667 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| || || || |||||||||| || || || |||| ||||| | ||||||| Sbjct 9091660 CCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATGAGGAGGAAGTCCTTCC 9091719 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || |||| || |||| |||||| | || || ||||| || || | || Sbjct 9091720 TTATCCTGGGTCTTGGCCTTTATATTTTCTGTAGTGTCCCAGGGTTCAACCTCGAGCGTG 9091779 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || ||||| | ||||| ||||| ||||||||| Sbjct 9091780 ACAGTTTTCCCTGTAAGGGTCTTCACAAAAATCTGCATT 9091818 >seq6 Length=117542938 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 35538764 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 35538823 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| | | |||||||||| || |||| Sbjct 35538824 TTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAAGTTCTTCCTTATCCTGGGTCTTG 35538883 Query 82728 GCTTTTACATTTTCAATCGTATC 82750 || ||||||||||| || || || Sbjct 35538884 GCCTTTACATTTTCTATAGTGTC 35538906 >seq15 Length=152823684 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||| |||| || || || || || || || || || | || || |||||| Sbjct 26701646 CCATCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCC 26701705 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| | || ||||| | || || ||| | || | || || ||||| Sbjct 26701706 TTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTG 26701765 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||||| ||||| | || |||||||| Sbjct 26701766 ATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 26701803 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||| |||| || || || || || || || || || | || || |||||| Sbjct 26702851 CCATCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCC 26702910 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| | || ||||| | || || ||| | || | || || ||||| Sbjct 26702911 TTGTCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTG 26702970 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||||||||||| ||||| | || |||||||| Sbjct 26702971 ATGGTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCAT 26703008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981759219511956