Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq15 136 4e-27 seq10 131 2e-25 seq3 131 2e-25 seq20 96.9 3e-15 seq16 95.1 1e-14 >seq15 Length=152823684 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| || ||| | | | || || |||||||||| Sbjct 125084974 GGTGGACTCTTTCTGGATGTTGTAATCTGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 125085032 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| |||||||| ||||||| || Sbjct 125085033 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCT 125085092 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| || || || | | Sbjct 125085093 TGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGG 125085152 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 125085153 TTTTCACAAAGATCTGCAT 125085171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || | ||||| ||| | || |||| ||||||||| | ||||||||||||||| Sbjct 26701649 TCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTG 26701708 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| |||||| || || | |||| | Sbjct 26701709 TCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATG 26701768 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || | ||| ||||||||| Sbjct 26701769 GTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATG 26701804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| || | ||||| ||| | || |||| ||||||||| | ||||||||||||||| Sbjct 26702854 TCCTCCAGTGGTTTGCCTGCGAATATCAGCCTCTGCTGGTCAAGTGGGATGCCTTCCTTG 26702913 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| |||||| || || | |||| | Sbjct 26702914 TCTTGGATCTTGACCTTGACATTCTTGATGGTGTCACTGGGCTGGACCTCAAAAGTGATG 26702973 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || | ||| ||||||||| Sbjct 26702974 GTCTTGCCTGTCAGGGTCTTCATGAAGATCTGCATG 26703009 >seq10 Length=90668104 Score = 131 bits (144), Expect = 2e-25 Identities = 141/184 (77%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | ||||| ||||| |||| Sbjct 33660479 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGTTTGC 33660537 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | | || |||| ||||||||| |||||||||||||||||||| |||||| || Sbjct 33660538 CCGAGAATATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCT 33660597 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| ||||| ||||| | Sbjct 33660598 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGG 33660657 Query 133642 TTTT 133645 | || Sbjct 33660658 TCTT 33660661 >seq3 Length=125065471 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 62144644 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCA-TCTTCTAGCTGCTTGC 62144586 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || |||| ||||||||| || |||||||| || || || |||||| || Sbjct 62144585 CCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 62144526 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 62144525 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 62144466 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 62144465 TCTTCACGAAGATCTGCAT 62144447 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || |||||||| || ||| | | | ||||| ||||| |||| Sbjct 98064621 GGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGTGGCCA-TCCTCTAGCTGTTTGC 98064679 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || |||| ||| |||||||| |||||| || Sbjct 98064680 CGGCGAATATCAGCCTCTGCTGGTCAGGTGGGAGGCCCTCCTTGTCTTGGATCTTGGCCT 98064739 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || || | |||| ||| ||||| |||| | Sbjct 98064740 TTACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCATCAGGG 98064799 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 98064800 TCTTCACGAAGATCTGCATG 98064819 Score = 123 bits (136), Expect = 2e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 62144872 GGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA-TCTTCTAGCTGCTTGC 62144814 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| || || || |||||| || Sbjct 62144813 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCT 62144754 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 62144753 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 62144694 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 62144693 TCTTCACGAAGATCTGCATG 62144674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||| || || || | | |||| ||||||||| || ||||||||||| || Sbjct 60138522 TCCTCCAGCTTTTTACCATCGAATACCAGCCTCTGCTGGTCAGGTGGGATGCCTTCACTG 60138581 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| | ||||| | || | ||||| |||||| || || | |||| | Sbjct 60138582 TCTTGGATCTTGTCCTTGACATTCTTGATGGTGTCACTGGGCTTGACCTCAAGAGTGATG 60138641 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||| | ||||| || || ||||| ||||||||| Sbjct 60138642 GTCTTGTCTGTCAGGGTCTTCACGAAGATCTGCATG 60138677 >seq20 Length=148322235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 |||||||||| || |||||||| | ||| | | | || || || |||||||| || Sbjct 135500362 ACTCTTTCTGGATGTTGTAATCAGAGAAGGTGCGGCCA-TCTTCCAGTTGCTTGCCTGCA 135500420 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | ||||||| |||||||||||| | |||||| || || || |||||| ||| | Sbjct 135500421 AAGATGAGCCTCTGCTGGTCGGG-GTGATGCCCTCTTTATCCTGGATCTTGGCCTTCACA 135500479 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | ||| | || || ||||||||| || | ||||| ||| ||||| ||||| || || Sbjct 135500480 TTCTCGATGGTTTCACTGGGCTCCATCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 135500539 Query 133647 ACGAAAATCTGCAT 133660 |||| || ||||| Sbjct 135500540 TCGAAGATTTGCAT 135500553 >seq16 Length=150978388 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| |||||||| || || ||||| || || Sbjct 58879397 TCTTCTAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGAATGCCCTCTTTA 58879456 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | ||||| |||||||||| || | ||||| | Sbjct 58879457 TCCTGGATCTTGGCCTTCACGTTCTCTATGGTGTCACTGGGCTCCACCTCTAGGGTGATG 58879516 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||||| || || | || |||||||| Sbjct 58879517 GTCTTGCCGGTCAGGGTCTTCAGAAAGATCTGCAT 58879551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483388144924960