Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq11 219 5e-52 seq8 113 5e-20 >seq11 Length=59623150 Score = 219 bits (242), Expect = 5e-52 Identities = 599/914 (66%), Gaps = 5/914 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| || || | |||||||| || || ||| ||| Sbjct 14062673 CCAGGGCTTTATGCCTCAGATGTTCATCCAAACACTGGATGGCAAAGGGGTCGACATCCA 14062732 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || ||||| || | | || |||| | | || || | Sbjct 14062733 TGTCAAACTTATTGGCAAAAAGGTGGTGTTGGCGCAGCA---TCCAGCTCAAGTCACCAG 14062789 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| || || |||||||| ||||| |||| || | Sbjct 14062790 CTCCGAAGACGCACACAGAGCGCACGTGGACTCCACTGCACGGTGGATAAGGGGCACCGT 14062849 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||| || ||| |||| |||||||| || ||||||| || || | |||||| | Sbjct 14062850 TGGAAACATGGCCTTCGAAGTACTGCCACTTGACAAACCTAGCAATGGCATTCATGTCTG 14062909 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||||| ||| || | | ||||| || | || | || || | | Sbjct 14062910 ACAAGTCATACTTGTTGCTTGAGGGGAAAGAACCAGGGACTTCTGGGATCCTTTGGATGG 14062969 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| ||| || ||||| || || || |||| | ||| ||||| |||| ||| Sbjct 14062970 TGGCCCAGAGGAACTCATCTGGGCTGTATGTGTCCTGTGCCCATTCCATCAACTTT-TGA 14063028 Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 |||| || | || | ||| || || ||| || || | ||||| || || Sbjct 14063029 ATATTTTCATTTTCCAGCACGTAGCCTACATATTCCCTAGTGACCACGAAGTAGGCACTG 14063088 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||| | || | | || || || ||||| || || |||||| | | Sbjct 14063089 CCTGAAAAGAGAGGAGTTTTCAGTGGGGGCGGTGCTTTGACTATTCCAGTGTTGGTCAGC 14063148 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 | || || || || || ||| || |||| || | ||| ||| || | | Sbjct 14063149 TTCCCATCGACAACGGTGTATCTTTTTTTCCATCTCTCTTCCTTGTTGGGAGGCATCTTC 14063208 Query 162598 TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTG 162657 || || || || |||| || || ||| |||| | || || || || ||| Sbjct 14063209 TCAGTTTCCAGGTTGTTTTCCCCTGTGGAGTACTTGAGCTTCCTGACAATTTCCAGGTTG 14063268 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 || |||| || || || | || |||||||| || | || ||||| || | | | | Sbjct 14063269 GTTTTAATAGGGAAATCCATACCACAGAGATTGATCAAGTACTTCCAGTTTGCATTCATT 14063328 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | |||||| |||| | ||||| || || |||| || |||||||| ||||| || || Sbjct 14063329 CTGTACAGGTCCTTCATGCAGTTGAGGTCTGCCTTAACCCGACTCCAGGACGCATAAACA 14063388 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 || ||||||||| |||| ||||||||||| || || || || | || ||| ||| Sbjct 14063389 ACACTCTCCAACTGGCTGGCCACAAAGACATTATCAAAGCAGGATGCGATGCCCTGCACC 14063448 Query 162838 GCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGG 162897 || | | || || ||||| || || ||||| | |||||| | ||||||||| Sbjct 14063449 GCGGCTAAAAAGGATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGC 14063508 Query 162898 GCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAA 162957 |||||||||||||| | || || | ||| || |||||||| || ||||| || ||| Sbjct 14063509 ATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATCTTATGATGAACCACAATGGAA 14063568 Query 162958 TACGCTATGGGGAA 162971 || || || || || Sbjct 14063569 TATGCAATTGGAAA 14063582 >seq8 Length=97876770 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||| |||||| || ||| || | ||| ||||| |||| | || |||||| |||| || Sbjct 43538753 ACATTCCCCAGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACTTGAGTTTTGGGG 43538809 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || | || ||||| || |||||||||||||| || ||| ||| | | | Sbjct 43538810 TCTTTGACCCGGAGGATGCTGGTGACAGATGTAGTCCCATTTGAATG--GAAGTGACTCT 43538867 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 ||||||||| || ||||| | || | | | ||||| | || |||| ||||| | | Sbjct 43538868 CAGTACTATTCTCAATTCCTGTCCCAGTACCCTTCCAGGAGATGGCAGGGGCTGGACGGG 43538927 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 43538928 CAGTCGCAGAGCAAGTGATGTTTA 43538951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578392926918400