Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17 120 7e-22 seq18 100 7e-16 seq11 98.7 2e-15 seq16 95.1 3e-14 seq6 93.3 1e-13 seq3 89.7 1e-12 seq14 87.8 4e-12 seq12 86.0 1e-11 seq15 84.2 5e-11 >seq17 Length=136257712 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| | || || ||| || ||||| | ||| Sbjct 39746325 AAGACCCTTACGGGGAAAACCATCACGCTAGAGGTTGAACCCTCGGACACTATAGAAAAT 39746384 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || || || || ||||| Sbjct 39746385 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTT 39746444 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| |||||||| | || |||||| | || || |||||| Sbjct 39746445 GCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCT 39746504 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||||||||||| Sbjct 39746505 ACCCTTCATCTGGTGTTGAGACTTCG 39746530 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| |||||||| || || | || ||||||| ||||||| Sbjct 39746530 CGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 39746471 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| |||| || ||| Sbjct 39746470 CGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGA 39746426 >seq18 Length=130317789 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206201 AAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTC 206260 |||| ||||| | || || ||| || ||||| | ||| |||||| ||||| | Sbjct 111279854 AAACCATCACGCTTGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAGATCC 111279795 Query 206261 AAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGG 206320 | || || ||||||||| || || || || || |||| || || |||||| ||| Sbjct 111279794 AGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGGTCTTTGCTGGTAAGCAGCTGG 111279735 Query 206321 AAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTT 206380 ||||||| |||||||| | || |||||| | || || ||||| || ||||| | || | Sbjct 111279734 AAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTGT 111279675 Query 206381 TGAGACTTCG 206390 |||||||||| Sbjct 111279674 TGAGACTTCG 111279665 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | ||||| || ||||| || || | || ||||||| ||||||| Sbjct 111279665 CGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 111279724 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || |||| |||| || ||| Sbjct 111279725 CGGCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGA 111279769 >seq11 Length=59623150 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| ||||| | || || ||| || ||||| | ||| |||||| ||| Sbjct 13412089 GGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGTCAAG 13412148 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 | || || || ||||||||| | || | || || || |||| || || ||| || Sbjct 13412149 ACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGAGGCTGGTCTTTGCTGGTAAG-AG 13412207 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 |||||||||| |||||||| | || |||||| | || || |||||||| ||||| || Sbjct 13412208 CTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTG 13412267 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 13412268 GTGTTGAGACTTCG 13412281 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| ||||| | || || ||| || ||||| | ||| |||||| ||| Sbjct 13413040 GGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGTCAAG 13413099 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 | || || || ||||||||| | || | || || || |||| || || ||| || Sbjct 13413100 ACCCAGGACAAGGAAGGAATTCTTCCTCATCAGCAGAGGCTGGTCTTTGCTGGTAAG-AG 13413158 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 |||||||||| |||||||| | || |||||| | || || |||||||| ||||| || Sbjct 13413159 CTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAAGGAGTCTACCCTTCATCTG 13413218 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 13413219 GTGTTGAGACTTCG 13413232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| |||||||| || || | || ||||||| ||||||| Sbjct 13412281 CGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 13412222 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||| ||| || || |||| |||| || ||| Sbjct 13412221 CGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGA 13412178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| |||||||| || || | || ||||||| ||||||| Sbjct 13413232 CGAAGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 13413173 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||| ||| || || |||| |||| || ||| Sbjct 13413172 CGGCCATCTTCCAGCT-CTTACCAGCAAAGACCAGCCTCTGCTGA 13413129 >seq16 Length=150978388 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || || | || ||||||| ||||||| Sbjct 3200032 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTC 3200091 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||| || || |||| |||| || ||| Sbjct 3200092 CGTCCATCTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGA 3200136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 |||| || || |||||| ||||||||||| |||||||| | || |||||| | || || | Sbjct 3200122 TCTTTGCTGGTAAGCAGCTGGAAGATGGACGGACTTTGTCTGACTACAACATTCAAAAGG 3200063 Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| || ||||| || || ||||||||||| Sbjct 3200062 AGTCCACCCTTCATCTGGTGTTGAGACTTCG 3200032 >seq6 Length=117542938 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||||||| || || ||||| || ||||| || || | || ||||||| |||||| Sbjct 35538745 TCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 35538804 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| |||| || ||| Sbjct 35538805 ACGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGA 35538850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 || ||||| | ||| |||||| |||| || || || |||| | || || || Sbjct 35538909 TCGGACACTATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGAACTTCCTCCTGAT 35538850 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 || || || ||||| || || |||||| |||||||||| | |||||| | || ||| Sbjct 35538849 CAGCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 35538790 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| | || || ||||| || ||||| || || |||||||||||| Sbjct 35538789 AACATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGA 35538745 >seq3 Length=125065471 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| |||| Sbjct 62144690 AAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAT 62144749 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || ||| || || || ||||| Sbjct 62144750 GTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTT 62144809 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | |||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 62144810 GCCGGCAAGCAGCTAGAAGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCG 62144869 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 62144870 ACCCTGCACCTGGT 62144883 >seq14 Length=152946536 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| ||||| | || || ||| || ||||| | ||| |||||| ||| Sbjct 128583811 GGGAAAACCATCACGCTCGAGGTTGAACCCTCGGACACTATAGAAAATGTAAAGGCCAAG 128583752 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 | || || || |||| | || || || || || | | ||| || || |||||| Sbjct 128583751 ACCCAGGATAAGGAAGAACTTCCTCCTGATCAGCAGAGGTTGACCTTTGCTGGTAAGCAG 128583692 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC---TCTTCAC 206373 |||||||||| |||||||| | || |||||| | || | ||||| || ||||||| Sbjct 128583691 CTGGAAGATGGCCGGACTTTGTCTGACTACAACATTCAAAGGGAGTCCACCCTTCTTCAC 128583632 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 128583631 CTTGTGTTGAGACTTCG 128583615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGA---GTAGACTCTTTCTGGACATTATAGTCAGCCAAA 204808 ||||||||||| |||||||||||| || ||||| | || | || ||||||| |||| Sbjct 128583615 CGAAGTCTCAACACAAGGTGAAGAAGGGTGGACTCCCTTTGAATGTTGTAGTCAGACAAA 128583674 Query 204809 GTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 204841 |||| ||||||||||||||||| || || ||| Sbjct 128583675 GTCCGGCCATCTTCCAGCTGCTTACCAGCAAAG 128583707 >seq12 Length=182815943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||| |||| || ||| | ||| Sbjct 146741776 CAGATTTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTGGAGGTTGAACCCTGGGAC 146741717 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| |||| || || || ||||||||| || || || Sbjct 146741716 ACTATAGAAAATGTAAAGGTCAAGACCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 146741657 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||| | ||||||| |||||||| | |||||| | Sbjct 146741656 AGGCTGATCTTTGCTGGTAAGCCTCCGAAAGATGGCCGGACTTTGAC----TACAACATT 146741601 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||| || || ||||||||||| Sbjct 146741600 CAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 146741563 >seq15 Length=152823684 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || ||||| |||| || || |||| Sbjct 125085168 CAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGTGAC 125085109 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || || || ||| || Sbjct 125085108 ACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 125085049 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| |||||||||| | || || | ||||||||| || Sbjct 125085048 AGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTACAACATC 125084989 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || ||||| || Sbjct 125084988 CAGAAAGAGTCCACCCTGCACCTGGT 125084963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181738972205084