Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq18 300 2e-76 seq8 174 2e-38 seq15 132 6e-26 seq1 132 6e-26 seq2 123 3e-23 seq19 87.8 2e-12 >seq18 Length=130317789 Score = 300 bits (332), Expect = 2e-76 Identities = 494/708 (70%), Gaps = 12/708 (2%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCA 146929 || |||||||| ||||| |||| || | || || |||||||||||||| ||||| | Sbjct 85151579 ATTTTGAGCTTTGGGAAAGGTCTTGGTT--CTCGCTGTAGCTGAATTTTCAGCGGCTCTA 85151522 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 || || ||||| | || || || |||| ||||| ||||| || || |||| || | Sbjct 85151521 TATGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGAC 85151462 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | || | || || | ||||||||||||||| | |||||||| |||||||| || || | Sbjct 85151461 CTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGC 85151402 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGT 147109 |||| ||||| || || ||||||||||| || ||||| || |||||||| | |||| | Sbjct 85151401 CCAGACCCATATCTCCTGACCTCTGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACAT 85151342 Query 147110 AAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCC 147169 | ||||| || ||| ||||| || ||||| ||||| ||| || || ||||||| Sbjct 85151341 AGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCC 85151282 Query 147170 AGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACC 147229 |||| | | | | | ||| || ||||| | || || || || | Sbjct 85151281 AGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTT 85151222 Query 147230 TCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAA 147289 ||||||||| || || || ||| ||| | || | || |||| || |||| Sbjct 85151221 GCAGCTGGTCTACTCCTTGTCCCGGGTAATCTGAATCCATATCTTTGTACTCTGCTCCAA 85151162 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGT---GC-GAG 147345 | |||||||| ||||| || || ||||| |||||||| | |||||||| || || Sbjct 85151161 AATGCCTCCATTGGAAACCATAAACTGGGCCCAGGTCCC----CTTTCTGTCGGGCAGAA 85151106 Query 147346 AAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTG 147405 || ||| | | ||||| || |||| || | ||| |||||||| | |||||||||| Sbjct 85151105 AATCCCAAGCTGTCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTG 85151046 Query 147406 GCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACC 147465 | ||| | || |||| | ||||| ||| ||| ||||| | || |||||||||||| Sbjct 85151045 GAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACA 85150986 Query 147466 CCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTC 147525 ||| |||| || || | ||||| || ||||| || || | || ||||| || | Sbjct 85150985 CCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGT 85150926 Query 147526 GCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 ||||| || ||||| ||||| ||||| ||||| || | ||||||| Sbjct 85150925 GCCTGCATGCCGAACACCGACAGGGTGCCTGTGCCGGTGCGGTCCTCC 85150878 >seq8 Length=97876770 Score = 174 bits (192), Expect = 2e-38 Identities = 230/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || | |||| |||| | || ||| | ||| || || Sbjct 43541389 GTGGTGACCCAGGATGAAAGAAAGGCGCTGCACACAACTGCATCCTTACGATGTTCTCTA 43541330 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 |||| || ||||| ||||||| || |||||||||| || || | ||||| Sbjct 43541329 AAGACATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTGAGCCCAGAA 43541270 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||||| ||| ||||| || ||||||| || || || |||| | Sbjct 43541269 AACATGGTCACCTACAGCAAAATCCATGGGGTTGTAATCCAGCCTGCCTACAAAGACAGG 43541210 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| |||| |||| |||||| ||||||| |||||| || ||||| || || || Sbjct 43541209 ATAAATGTCACAGAGCTGGGACTCTGGAACTCAAGCATCACCTTCTGGAACACAACATTG 43541150 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| ||||| ||||| ||| ||| |||| || Sbjct 43541149 GAAGATGAGGGTTGCTACATGTGTCTCTTCAACACGTTTGGTTCTCAGAAGGTCTCAGGA 43541090 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||| ||||||| Sbjct 43541089 ACAGCTTGCCTTACCCTCT 43541071 Score = 145 bits (160), Expect = 9e-30 Identities = 186/254 (73%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || | |||||| |||||||| |||||||| || Sbjct 43538997 GTACAGCCCATAGTACACCTACACTACAATTATTTTGAAGACCACCTAAACATCACTTGC 43538938 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | |||||| || | ||| || | |||||| | | ||| ||| |||||| Sbjct 43538937 TCTGCGACTGCCCGTCCAGCCCCTGCCATCTCCTGGAAGGGTACTGGGACAGGAATTGAG 43538878 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| || | |||||| ||||| ||||| ||||| ||||| | |||| Sbjct 43538877 AATAGTACTGAGAGTCACTTCCATTCAAATGGGACTACATCTGTCACCAGCATCCTCCGG 43538818 Query 171573 GTTAAAGACCCCAAGAGTC-AGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGG 171631 || ||||||||||| | || ||||||| ||||| || |||||||| || | ||||||| Sbjct 43538817 GTCAAAGACCCCAAAACTCAAGTTGGG-AAGGAAGTGATCTGCCAGGTTTTATACCTGGG 43538759 Query 171632 AAATGTAACTAACT 171645 ||||| | | ||| Sbjct 43538758 GAATGTGATTGACT 43538745 >seq15 Length=152823684 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | || || | ||||||||||||||| | |||||||| |||||||| || Sbjct 27100105 AGGCCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGC 27100164 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||| ||||| || || ||||||||||| |||||||| || |||||||| | || Sbjct 27100165 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 27100224 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || ||||| || ||| ||||| || ||||| ||||| Sbjct 27100225 ACATAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 27100265 >seq1 Length=198846266 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| || |||| Sbjct 131965095 AGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAGTGA 131965154 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | || | Sbjct 131965155 TGCCCCAGGCAGAGAAGCA------------TGGCCCAGAAATCAAGGAGCATTTGAATT 131965202 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || || |||||||||| ||| Sbjct 131965203 CCCTGGGTGAGAAGCTGAAGACCCTCAGGATGCGGCTGCGGCGCTGT 131965249 >seq2 Length=131945496 Score = 123 bits (136), Expect = 3e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 147361 AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTA 147420 ||||| || |||| || | ||| |||||||| | ||||||||||| ||| | || ||| Sbjct 87052993 AGAAAGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTA 87052934 Query 147421 GAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACC 147480 | | ||||| ||| ||| ||||| | || |||||||||||| ||| |||| || || Sbjct 87052933 GCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACT 87052874 Query 147481 CTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAAC 147540 | ||||| || ||||| || || | || ||||| || | ||||| || ||| Sbjct 87052873 CGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGGCTGTATCGTGCCTGCATGCCGAAC 87052814 Query 147541 ACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || ||||| ||||| ||||| || | ||||||| Sbjct 87052813 ACCGACAGGGTGCCTGTGCCGGTGCGGTCCTCC 87052781 >seq19 Length=126249303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| | || ||| ||| | ||||| | || || ||||| Sbjct 125989285 GTACTCCCTGGTGTTCATCATTGGCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCAT 125989226 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGC 8720 | | |||||||||| | | |||||||| ||||| ||||||||||||||| Sbjct 125989225 ACAACACAAGAGGCTTCGAAACATGACCAGCATCTACCTGTTCAACCTGGC 125989175 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||| ||||| | |||| | | ||||||| ||| ||||| || || ||||| Sbjct 125960319 GTATTCTCTAGTGTTCATCATTGGAGTGTTGGGCAATGTCCTAGTGATTCTGGTGCTCAT 125960260 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || | | |||||| | |||||||| ||||| ||||||||||||||| | ||| Sbjct 125960259 GCAGCATAGGAGGCTTCAAAGCATGACCAGCATCTACCTGTTCAACCTGGCTGTCTCTGA 125960200 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||||||| | || || |||||| ||| Sbjct 125960199 TCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACT 125960162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583448585385600