Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-33 seq13 152 7e-31 seq5 147 3e-29 seq14 131 2e-24 seq17 116 5e-20 seq4 86.0 9e-11 >seq3 Length=125065471 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| || |||| |||| || ||| ||||| Sbjct 58203822 TACAAGGTGCTGAAGCAGGTGCATCCGGACACCGG-----CATC-TCGTCTAAGGCCATG 58203875 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||| ||||| |||| ||||||| || ||||||| ||| Sbjct 58203876 GGCATCATGAACTCGTTCGTCAATGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 58203935 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| ||||||||| Sbjct 58203936 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGC 58203995 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||| ||||| ||||||||||||| Sbjct 58203996 CTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 58204044 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||| || |||| |||| || ||| ||||| Sbjct 58209053 TACAAGGTGCTGAAGCAGGTGCATCCGGACACCGG-----CATC-TCGTCTAAGGCCATG 58209000 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||| ||||| |||| ||||||| || ||||||| ||| Sbjct 58208999 GGCATCATGAACTCGTTCGTCAATGACATCTTCGAGCGCATCGCCAGCGAGGCCTCCCGC 58208940 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| ||||||||| Sbjct 58208939 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGC 58208880 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||| ||||| ||||||||||||| Sbjct 58208879 CTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 58208831 >seq13 Length=160222558 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 94122198 TACAAAGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 94122251 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||| ||||| | || ||||| | | |||||| |||| Sbjct 94122252 GGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGC 94122311 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| |||| ||||||||||| | |||||| Sbjct 94122312 CTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGTCGGTGCGC 94122371 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| |||||||||| ||||||||| || |||||||||| Sbjct 94122372 CTTCTACTGCCCGGAGAACTGGCCAAGCACGCCGTGTCGGAGGGCACCA 94122420 Score = 89.7 bits (98), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| || ||||| ||||| ||| || || |||| || ||| | ||| Sbjct 94174094 TACAAGGTCCTGAAGCAAGTGCATCCCGACAC-----GGGCATC-TCATCTAAGGCTATG 94174147 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || || ||||| || |||| ||||||| ||||| || Sbjct 94174148 GGAATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGT 94174207 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | || ||||||||||| |||||||| Sbjct 94174208 CTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGT 94174267 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| || || |||| | ||||| || || || ||||||| Sbjct 94174268 CTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCA 94174316 >seq5 Length=117181667 Score = 147 bits (162), Expect = 3e-29 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| |||||||||||||| || |||||||| |||| ||||||| ||| Sbjct 19295171 CAAGGCCATGGGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGCGA 19295112 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| |||||||||| | |||||||||| ||| ||| | | || ||||||||||| Sbjct 19295111 GGCGTCCCGCCTGGCGCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGAC 19295052 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||||||| | ||| ||| || ||||||| |||||| || || |||||||||| Sbjct 19295051 GGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCGGTGTCAGAGGGCACCA 19294993 Score = 105 bits (116), Expect = 1e-16 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 725005 TCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCG 725064 |||| ||||||| | |||||| |||||||||| | |||||||||| || ||| Sbjct 19712722 TCGAGCGCATCGCGAGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCA 19712781 Query 725065 GCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACG 725124 | || ||||||||||| |||||||||||| | ||| ||| || ||||| | ||||| Sbjct 19712782 CGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCTAAGCACG 19712841 Query 725125 CCGTCTCCGAGGGCACCA 725142 |||| || |||||||||| Sbjct 19712842 CCGTGTCGGAGGGCACCA 19712859 Score = 104 bits (114), Expect = 3e-16 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 725011 GCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGC 725070 |||||| | |||||| |||||||||| | |||||||||| || ||| | | Sbjct 19536954 GCATCGCGAGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCC 19536895 Query 725071 GCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCT 725130 | ||||||||||| |||||||||||| | ||| ||| || ||||||| |||||| |||| Sbjct 19536894 GGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCGGTCT 19536835 Query 725131 CCGAGGGCACCA 725142 | |||||||||| Sbjct 19536834 CGGAGGGCACCA 19536823 Score = 100 bits (110), Expect = 4e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAAC 725057 ||||| |||| ||||||| |||||| |||||||||| | |||||||||| Sbjct 19514002 GACATCTTCGAGCGCATCGCGGGCGAGGCGTCCCGCCTGGCGCATTACAACAAGCGCTCG 19514061 Query 725058 ACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCC 725117 || ||| | || ||||||||||| |||||||||||| | ||| ||| || |||| Sbjct 19514062 ACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGTTGCTGCCCGGGGAGTTGGCT 19514121 Query 725118 AGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||||||| || |||||||||| Sbjct 19514122 AAGCACGCCGTGTCTGAGGGCACCA 19514146 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 19480774 CGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 19480715 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| |||||||||| |||||| || || |||||||||| Sbjct 19480714 CGCCTGCTGCTGCCCGGGGAACTGGCCAAGCACGCGGTGTCGGAGGGCACCA 19480663 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| | |||||||||| || ||| | || ||||||||||| |||||| Sbjct 19518518 CGCCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTG 19518459 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 19518458 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 19518407 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 |||||||| | |||||||||| || ||| | || ||||||||||| |||||||| Sbjct 18046821 CCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCG 18046880 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| |||||| || || |||||||||| Sbjct 18046881 CCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCGGTGTCGGAGGGCACCA 18046930 >seq14 Length=152946536 Score = 131 bits (144), Expect = 2e-24 Identities = 168/229 (73%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| ||||||||| |||| |||| ||| |||| ||||| Sbjct 115989177 TACAAGGTGCTGAAGCAAGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 115989230 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | || || ||| Sbjct 115989231 GGCATCATGAACTC-TTCGTGAACGACATCTTCGAGCGCATCGCGAGCGTTGCGTCGCGC 115989289 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||| | || ||| | || |||||||||||||| |||||| Sbjct 115989290 CTGGCGCATTACAACAAGCACTTGACCATCACGTCCCGGGAGATCCAGACCGCAGTGCGC 115989349 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || || || ||||||| |||||| || | |||||||||| Sbjct 115989350 CTGCTGCCGCCTGGGGAGCTGGCCAAGCACGCGGTGTTGGAGGGCACCA 115989398 >seq17 Length=136257712 Score = 116 bits (128), Expect = 5e-20 Identities = 170/237 (72%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| ||||||||| |||| |||| ||| |||| ||||| Sbjct 50084086 TACAAGGTGCTGAAGCAAGTGCACCCCGACACCGG-----CATC-TCCTCCAAGACCATG 50084139 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG--GCCGGTC 725031 |||||||||||||| || |||||||| |||| | |||| | | || | ||||| Sbjct 50084140 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCACATCACAAGCAAGGTGTCGGTC 50084199 Query 725032 G--CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | |||||| | | |||||||||| || ||| | | |||||||||| ||||| Sbjct 50084200 GCACCTGGCACATTACAACAAGCGCTTGACCATCACGTCCCAGGAGATCCAGAGGGCCGT 50084259 Query 725090 GC----GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | | | | || ||||||| ||||||| | || |||||||||| Sbjct 50084260 GCTTATGCCTGCTGCTCCCCAGGGAGCTGGCCAAGCACGCCATGTCAGAGGGCACCA 50084316 >seq4 Length=114123490 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||| ||||| | || ||||| |||||| || | || |||||| ||||| Sbjct 16580105 GAGCCGTTGCTGAGAGAAAACCCCCGCCGCTTCGTTGTCTTTCCCATCGAGTACCATGAT 16580164 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| | |||| ||||||||||||||||||| ||||||||||| Sbjct 16580165 ATCTGGCAGATGTACAAGAAAG-CCGAGGCCTCCTTTTGGACTGCCGAGGAGGT 16580217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177289974267448