Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq1874 96.9 1e-15 >seq1874 Length=4495 Score = 96.9 bits (106), Expect = 1e-15 Identities = 174/249 (70%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 4520 GCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGACCTC 4579 ||||| ||||||||||| ||||| ||| ||||||||||| | | | ||||| Sbjct 3444 GCCAAACTCCTGATCGTCGACGAAGTGTCGATGGTCGACGACAGTTTGGCTCGCGACCTG 3385 Query 4580 CTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTGGCC 4639 |||||||| | || || ||||||| ||| ||||| || || |||||||| || || Sbjct 3384 CTGTCGTTTGACGTTCCTATCCTCGTCCTTGGCGATCCGGCGCAGCTGCCTCCCGTCAAA 3325 Query 4640 GGGGCTGGATTCTTCACCAA-GCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGCCA 4698 || | || | |||| ||| || | | ||||| |||| ||||| | || || || Sbjct 3324 GGCGAGGGGTATTTCATCAACGCTGCA-CCCGACACGATGCTTACCGAGGTTCATCGTCA 3266 Query 4699 GGCCCGCGACAACCCCATCATTGAGATGTCGCGCAT---CGTCCGCGAGGGTGGAACCCT 4755 ||| |||||||| || ||||| || | |||| |||||||||||| || | || Sbjct 3265 GGCGCGCGACAATCCGATCATCCGCAT---GAGCATGGACGTCCGCGAGGGCGGTGCGCT 3209 Query 4756 GAACCTGGG 4764 |||| ||| Sbjct 3208 -AACCCGGG 3201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180785197817352