Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 seq17 91.5 1e-13 seq12 86.0 6e-12 seq8 82.4 8e-11 >seq15 Length=152823684 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || |||||||| || Sbjct 125084945 CCACCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAC 125085004 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | |||||| || || || Sbjct 125085005 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 125085064 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || ||| ||||| || | ||||| | || || Sbjct 125085065 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 125085124 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 125085125 TCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 125085171 >seq17 Length=136257712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || |||||||||||||||||||| | ||| || | Sbjct 39746527 AGTCTCAACACCAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTCCG 39746469 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || ||||| |||| | ||||||||| || || || ||||| Sbjct 39746468 GCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 39746409 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| || || || || Sbjct 39746408 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCTAGCGT 39746349 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || || | || ||||| Sbjct 39746348 GATGGTTTTCCCCGTAAGGGTCTTCACAGAGATCTGCAT 39746310 >seq12 Length=182815943 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/130 (75%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| ||||||||| || || || || |||||||||||||||||||| | || || Sbjct 92361974 AGTCTCAACACGAGTTGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AAAGTATGG 92361919 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC-TTC 134614 || || ||||| ||||| ||| | ||||| | ||||||||| || || || || ||| Sbjct 92361918 CCATCTTCCAGCTGCTTGCCAGCACAGATCAACCTCTGCTGATCAGGAGGAATTCCTTTC 92361859 Query 134615 TTTTTCTTGA 134624 || |||| || Sbjct 92361858 TTATTCTGGA 92361849 >seq8 Length=97876770 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAAC-GGTGTGAGAGT 134559 |||||| || || || ||||| ||||||||||||||||||| | ||| || || | Sbjct 13844523 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGT--CAAACAAGTATGGCCAT 13844466 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || ||||| || || ||||| | || | ||||||||| || || || ||||| || | Sbjct 13844465 CTTCCAGCTGCTTACCAGCAAAGACCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 13844406 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGG 134679 | || || || || || || | ||||| | ||| || ||||| || |||| Sbjct 13844405 CCTGGATCTTGGCCTTTACATTTTCTATGGTGTCCAGGGGTTCAACCTCGAGCGTGATGG 13844346 Query 134680 TTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || | | || || || ||||| ||||| Sbjct 13844345 TCTTCCCCATAAGGGTCTTCACAAAAATCTGCAT 13844312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505364260338080