Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26]
5,404 sequences; 2,625,587,472 total letters
Query= NC_028099.1
Length=122522
Score E
Sequences producing significant alignments: (Bits) Value
seq18 203 3e-47
seq15 111 1e-19
seq2 95.1 9e-15
>seq18
Length=130317789
Score = 203 bits (224), Expect = 3e-47
Identities = 493/739 (67%), Gaps = 21/739 (3%)
Strand=Plus/Minus
Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621
||| ||| | ||||| || || | ||||| || |||| || |||| | ||||||
Sbjct 85151677 AAACAGCCATTTCCATTTTAATCGTTGGATGTGGATTATACC-CTTCAATCTGAAAGTCT 85151619
Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681
||| | ||||| || || ||||| |||| ||||| || ||||| || ||
Sbjct 85151618 TCAACTTTGAAATCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGT 85151559
Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741
| || | ||| ||||| | || | |||| ||| ||||| | |||| ||| |||
Sbjct 85151558 CTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCA 85151499
Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801
||||| | | |||| || || | |||| || ||| ||||| ||||||||||||||
Sbjct 85151498 TCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTAG 85151439
Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861
||||| ||| || || |||||||| || ||||| || || ||||||||||| || ||
Sbjct 85151438 GTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCTC 85151379
Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921
|| || || || || || || | | |||||| || ||||| || |||| |||
Sbjct 85151378 TGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGAGGGCATGGCAA 85151319
Query 111922 GGAGGCAATGCCATC----CCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977
||||||| ||||||| | | |||| ||| ||||||||||| || |||||
Sbjct 85151318 GGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGT-TCCAGGCACACATGATGATTCTTCT 85151260
Query 111978 GCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACC 112037
| | | || || ||| || || | || |||||||||| |||| ||
Sbjct 85151259 GTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTCC 85151200
Query 112038 AGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCCATTGGAAT 112092
| |||| |||| ||||| |||| ||| ||| | || |||||||||||
Sbjct 85151199 CGGGTAAT----CTGA-ATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAA 85151145
Query 112093 CCATAAATAGGCCCCAGATCTCCCGGGGCTGT--ATCTGGAAATTGCTCTCTATTCAACA 112150
||||||| || ||||| |||| |||| | | |||| | || | || |
Sbjct 85151144 CCATAAACTGGGCCCAG--GTCCCCTTTCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAA 85151087
Query 112151 AATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCAT 112210
| || | || | || ||| || ||||||| || || || || ||| | ||||
Sbjct 85151086 AGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCAT 85151027
Query 112211 TTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTT 112270
|||||||||| | |||||||| | ||| || |||| ||| || |||||| |||||| ||
Sbjct 85151026 TTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTT 85150967
Query 112271 TAGTAGTTAGCAGTGGaaa 112289
| || || ||||| |||||
Sbjct 85150966 TGGTTGTGAGCAGAGGAAA 85150948
>seq15
Length=152823684
Score = 111 bits (122), Expect = 1e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837
|| ||||| |||||||||||||| ||||| ||| || || |||||||| || |||||
Sbjct 27100108 CCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACG 27100167
Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897
|| || ||||||||||| || || || || ||||| || || || | | ||||
Sbjct 27100168 CCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACA 27100227
Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936
|| || ||||| || |||| |||||||||| |||||||
Sbjct 27100228 TAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 27100266
>seq2
Length=131945496
Score = 95.1 bits (104), Expect = 9e-15
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229
|| ||| || ||||||| || || || || ||| | |||||||||||||| | |||||
Sbjct 87052970 ATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAA 87052911
Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGaaa 112289
||| | ||| || |||| ||| || |||||| |||||| ||| || || ||||| |||||
Sbjct 87052910 CCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAA 87052851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 391919785972852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |