Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq18 203 3e-47 seq15 111 1e-19 seq2 95.1 9e-15 >seq18 Length=130317789 Score = 203 bits (224), Expect = 3e-47 Identities = 493/739 (67%), Gaps = 21/739 (3%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || || | ||||| || |||| || |||| | |||||| Sbjct 85151677 AAACAGCCATTTCCATTTTAATCGTTGGATGTGGATTATACC-CTTCAATCTGAAAGTCT 85151619 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||| | ||||| || || ||||| |||| ||||| || ||||| || || Sbjct 85151618 TCAACTTTGAAATCATCGATTGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGT 85151559 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| ||||| | || | |||| ||| ||||| | |||| ||| ||| Sbjct 85151558 CTTGGTTCTCGCTGTAGCTGAATTTTCAGCGGCTCTATATGATTCAGGTAAATATGTGCA 85151499 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | |||| || || | |||| || ||| ||||| |||||||||||||| Sbjct 85151498 TCTCCCAAAGTGTGGACAAAATCACCTGGCTGCAGACCTGTGATATGTGCAATCATGTAG 85151439 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| ||| || || |||||||| || ||||| || || ||||||||||| || || Sbjct 85151438 GTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACGCCCAGACCCATATCTCCTGACCTC 85151379 Query 111862 TGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAA 111921 || || || || || || || | | |||||| || ||||| || |||| ||| Sbjct 85151378 TGGTAAAGTTGGCAAGACAGCTCCCCATTCACCACATAGAACTGACAGAGGGCATGGCAA 85151319 Query 111922 GGAGGCAATGCCATC----CCATTCATAAAGGGTCCCCATGCACACATGATCATCCTTCT 111977 ||||||| ||||||| | | |||| ||| ||||||||||| || ||||| Sbjct 85151318 GGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGT-TCCAGGCACACATGATGATTCTTCT 85151260 Query 111978 GCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACC 112037 | | | || || ||| || || | || |||||||||| |||| || Sbjct 85151259 GTCATCAGGGTTGGTTTTGATGGTGTCAATCATTTTTTGCAGCTGGTCTACTCCTTGTCC 85151200 Query 112038 AGTATAATCCGCCTGACATCCA-----GTGTATGTTGCCCCATAGTGTCTCCATTGGAAT 112092 | |||| |||| ||||| |||| ||| ||| | || ||||||||||| Sbjct 85151199 CGGGTAAT----CTGA-ATCCATATCTTTGTACTCTGCTCCAAAATGCCTCCATTGGAAA 85151145 Query 112093 CCATAAATAGGCCCCAGATCTCCCGGGGCTGT--ATCTGGAAATTGCTCTCTATTCAACA 112150 ||||||| || ||||| |||| |||| | | |||| | || | || | Sbjct 85151144 CCATAAACTGGGCCCAG--GTCCCCTTTCTGTCGGGCAGAAAATCCCAAGCTGTCCAGAA 85151087 Query 112151 AATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCAT 112210 | || | || | || ||| || ||||||| || || || || ||| | |||| Sbjct 85151086 AGTCTCGGGATCCATTGGCATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCAT 85151027 Query 112211 TTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTT 112270 |||||||||| | |||||||| | ||| || |||| ||| || |||||| |||||| || Sbjct 85151026 TTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTT 85150967 Query 112271 TAGTAGTTAGCAGTGGaaa 112289 | || || ||||| ||||| Sbjct 85150966 TGGTTGTGAGCAGAGGAAA 85150948 >seq15 Length=152823684 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || ||||| |||||||||||||| ||||| ||| || || |||||||| || ||||| Sbjct 27100108 CCTGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAAGGCACG 27100167 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||||||||| || || || || ||||| || || || | | |||| Sbjct 27100168 CCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACA 27100227 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || ||||| || |||| |||||||||| ||||||| Sbjct 27100228 TAGAACTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 27100266 >seq2 Length=131945496 Score = 95.1 bits (104), Expect = 9e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| || ||||||| || || || || ||| | |||||||||||||| | ||||| Sbjct 87052970 ATCCCAGATTCTCACTCCCTTGGAGGACAATTCTTTAGCATTTGTGGATCCCTTGATAAA 87052911 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGaaa 112289 ||| | ||| || |||| ||| || |||||| |||||| ||| || || ||||| ||||| Sbjct 87052910 CCACAACAACTCCTCCAAAACACCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAA 87052851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391919785972852